Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PputGB1_5115 |
Symbol | |
ID | 5872930 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida GB-1 |
Kingdom | Bacteria |
Replicon accession | NC_010322 |
Strand | + |
Start bp | 5718704 |
End bp | 5720401 |
Gene Length | 1698 bp |
Protein Length | 565 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 641550253 |
Product | choline dehydrogenase |
Protein accession | YP_001671335 |
Protein GI | 167036104 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG2303] Choline dehydrogenase and related flavoproteins |
TIGRFAM ID | [TIGR01810] choline dehydrogenase |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 0.179508 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 50 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGTCCCAAG AATTCGATTA CATCATCGTC GGTGCCGGCT CGGCCGGTAA CACCCTGGCT ACCCGCCTGA CCGAAGACGC CGGCGTCACC GTCCTGCTGC TTGAAGCCGG TGGCCCTGAT TACCGCTTCG ACTTCCGCAC CCAGATGCCA GCTGCCCTGG CCTTCCCGCT GCAGGGCCGC CGCTACAACT GGGCCTACGA GACCGATCCC GAGCCGCACA TGGACGGCCG CCGCATGGAA TGTGGCCGTG GCAAAGGCCT GGGTGGCTCG TCGCTGATCA ACGGCATGTG CTACATCCGT GGCAACGCCA TGGACTTCGA CGGCTGGGCA GAACTGCCAG GCCTGCAAGA CTGGACCTAC CTGGACTGCC TGCCGTACTT CCGCAAAGCC GAAACCCGCG ACATCGGCCC GAACGACTAC CACGGTGGCG AAGGCCCGGT CAGCGTCGCC ACGCCGAAGG CTGGCAACAA CCCGTTGTTC CACGCCATGG TTGAAGCCGG CGTACAAGCC GGTTACCCAC GCACCGAAGA CCTCAACGGC TACCAGCAGG AAGGCTTCGG CCCGATGGAC CGTTCGGTCA CCAAGAACGG CCGCCGTTCC AGCACCGCCC GTGGCTACCT GGACCAGGCC AAGAAGCGCC CGAACCTGAC CATCGTCACC CACGCTCTGA GCGACCGCGT GCTGTTCGAC GGCAAGCGCG CCGTAGGCGT GACCTACCTG GTCGGCGACA GTGAAGAGCG CGTTGAAGCC CGCGCCCGCA AGGAAGTGAT CGTCAGCTCC GGCGCCATCG CCTCGCCGCA GCTGCTGCAG CGCTCCGGCG TTGGCCCGCG CGCCCTGCTG GAAAGCCTCG ACATCCCGGT TGTGCACGAT CTGCCGGGCG TTGGCGAAAA CCTGCAGGAC CACCTTGAGC TGTACCTGCA GTACGCCTGC ACCCAACCGG TATCGCTGTA CCCATCGCTG CTTTGGTGGA ACCAGCCAGC TATCGGTGCA GAGTGGATGT TCAAAGGCAC CGGTATCGGC GCCAGCAACC AGTTCGAGGC CGGTGGTTTC ATCCGTACCC GCCCTGAGTT CAAGTGGCCG AACATTCAGT ACCACTTCCT GCCAGTCGCC ATTAACTACA ACGGCTCCAA TGGCGTGAAG GAACACGGCT TCCAGGCGCA CATGGGCTCC ATGCGCTCGC CTGCCCGCGG CCGCATCCAG GCCAAGTCGA AAGACCCGCG CCAGCACCCA AGCATCCTGT TCAACTACAT GTCCACCGAG CAGGACTGGC AGGAGTTCCG CGACGGTATC CGCCTGACCC GCGAAATCAT GGCCCAGCCG GCGCTGGACC CGTACCGTGG CCGCGAAATC AGCCCAGGCG CCGACGTGCA AACCGACGAG CAGCTGGACA AGTTCATCCG CGAGCACGCC GAAACCGCCT TCCACCCGTC CTGCTCGTGC AAGATGGGCA CCGACGACAT GGCAGTGGTC GATGGCGAAG GCCGCGTGCA TGGCATGAAG GGCCTGCGTG TGGTCGATGC GTCGATCATG CCGCTGATCA TCACCGGCAA CCTCAACGCC ACCACGATCA TGATCGCCGA GAAAATTTCG GACAAGATCC GCGGCCGCAA GCCGTTGCCG CGCAGCACCG CCAAGTACTA TGTGGCGGGT GATGCACCGG TGAAAGGCAA GCCGATGCGT GAAGTGAAGC AGGCGTAA
|
Protein sequence | MSQEFDYIIV GAGSAGNTLA TRLTEDAGVT VLLLEAGGPD YRFDFRTQMP AALAFPLQGR RYNWAYETDP EPHMDGRRME CGRGKGLGGS SLINGMCYIR GNAMDFDGWA ELPGLQDWTY LDCLPYFRKA ETRDIGPNDY HGGEGPVSVA TPKAGNNPLF HAMVEAGVQA GYPRTEDLNG YQQEGFGPMD RSVTKNGRRS STARGYLDQA KKRPNLTIVT HALSDRVLFD GKRAVGVTYL VGDSEERVEA RARKEVIVSS GAIASPQLLQ RSGVGPRALL ESLDIPVVHD LPGVGENLQD HLELYLQYAC TQPVSLYPSL LWWNQPAIGA EWMFKGTGIG ASNQFEAGGF IRTRPEFKWP NIQYHFLPVA INYNGSNGVK EHGFQAHMGS MRSPARGRIQ AKSKDPRQHP SILFNYMSTE QDWQEFRDGI RLTREIMAQP ALDPYRGREI SPGADVQTDE QLDKFIREHA ETAFHPSCSC KMGTDDMAVV DGEGRVHGMK GLRVVDASIM PLIITGNLNA TTIMIAEKIS DKIRGRKPLP RSTAKYYVAG DAPVKGKPMR EVKQA
|
| |