Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PputGB1_4976 |
Symbol | |
ID | 5872791 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida GB-1 |
Kingdom | Bacteria |
Replicon accession | NC_010322 |
Strand | + |
Start bp | 5551768 |
End bp | 5553204 |
Gene Length | 1437 bp |
Protein Length | 478 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 641550114 |
Product | TolC family type I secretion outer membrane protein |
Protein accession | YP_001671196 |
Protein GI | 167035965 |
COG category | [M] Cell wall/membrane/envelope biogenesis [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1538] Outer membrane protein |
TIGRFAM ID | [TIGR01844] type I secretion outer membrane protein, TolC family |
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Plasmid Coverage information |
Num covering plasmid clones | 35 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 42 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCTGCGCA AACTCTCACT GGCGATAGCC GTGTCTTGTG CGTCCAACGG AGTGGTCTGG GCAGCGGACG TGCCCCAATC AGTAAAGACC GACCTGGTCA GCGTCTATCA GGAAGCGGTC GACAACAACG CCGACCTGGC GGCGGCACGC GCCGATTACG GCGCCCGCAA AGAGGTGGTG CCCCAAGCCC GTGCCGGGTT GCTGCCAAAC CTGTCGGCCG GCGCAGAAAT GCTGAACACG CGCACCAAGC TGGACGAACC ATCGACCACC AGCAACCGCA GCGGCAACAC CTGGAGCGCC ACCCTGGCTC AGCCGATCTT CCGCGCTGAC CGCTGGTTCC AGCTGCAAGC GGCCGAAGCG GTCAACGAAC AGGCAGCGCT GGAGCTGTCG GCGACCGAGC AGAACCTGAT CCTGCAAACC GCGCAGAACT ACTTCGCCGT ACTTCGCGCA CAGGACAACC TGGCCGCGAC CAAGGCCGAG GAAGCGGCCT TCAAACGCCA GCTGGACCAG TCCAACGAAC GCTTCGACGT CGGCCTTTCC GACAAGACCG ACGTGCTGCA GTCCCAAGCC AGCTACGACA CCGCCCGGGC CAACCGGATC ATCGCCGAAC GCCAGGTGCA AGACGCCTTC GAGGCCCTGG TGACCCTGAC CAACCGCGAA TACACCTCGA TCCAGGGGGT GGTGCACACC CTGCCGGTGC AGGTGCCTAC ACCTAACGAC GCCAAGGCCT GGGTAGAAAC CGCTGGTCGC CAGAACCTCA ACCTGTTGGC GACCAACTAC GCGGTTTCCG CCGCCGAAGA AACCCTGCGC CAGCGCAAGG CCGGCCATGC GCCGACCCTT GACGCAGTGG CCAAGTACCA GAAAGGTGAC AACGACAACT TCGGTTTCAC CAACCCCGCA CCAGCCCCCG TCACGCGCTA CGGCGGCGAT GTCGAGCAGA CCAGCATCGG CCTGCAACTG AACATCCCGA TCTACAGCGG CGGCCTGACC AGCTCGCAGG TGCGCGAGGC CTACCAGCGC CTGAGCCAGA GCGAGCAGCA ACGCGAAAGC CTGCGCCGCC AGGTGGTGGA AAACACCCGC AACCTGCACC GCGCGGTGAA CACCGATGTA GAGCAGGTAC AGGCGCGCAA GCAGTCGATC ATCTCCAACC AGAGTGCGCT GGAAGCCACC GAAATCGGTT ACCAGGTCGG TACACGCAAC ATCGTCGACG TGCTCGATGC CCAGCGCCAG CTGTACACCT CGGTGCGCGA CTACAACAAC AGCCGCTATG ACTACATTCT CGACAACCTG AGCCTGAAGC AGGCAGCCGG CACCCTGAGC CCGCAAGACC TGCAGGACCT CAAGCGTTAC CTGAAAGCGG ACTACAACCC GGACAAGGAC TTCCTGCCAC CGGACCTGGC GGCTGCCGCG GCGAAGAACT TCGAGCGCCG CCCTTGA
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Protein sequence | MLRKLSLAIA VSCASNGVVW AADVPQSVKT DLVSVYQEAV DNNADLAAAR ADYGARKEVV PQARAGLLPN LSAGAEMLNT RTKLDEPSTT SNRSGNTWSA TLAQPIFRAD RWFQLQAAEA VNEQAALELS ATEQNLILQT AQNYFAVLRA QDNLAATKAE EAAFKRQLDQ SNERFDVGLS DKTDVLQSQA SYDTARANRI IAERQVQDAF EALVTLTNRE YTSIQGVVHT LPVQVPTPND AKAWVETAGR QNLNLLATNY AVSAAEETLR QRKAGHAPTL DAVAKYQKGD NDNFGFTNPA PAPVTRYGGD VEQTSIGLQL NIPIYSGGLT SSQVREAYQR LSQSEQQRES LRRQVVENTR NLHRAVNTDV EQVQARKQSI ISNQSALEAT EIGYQVGTRN IVDVLDAQRQ LYTSVRDYNN SRYDYILDNL SLKQAAGTLS PQDLQDLKRY LKADYNPDKD FLPPDLAAAA AKNFERRP
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