| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_4935 |
|---|
| Symbol | |
|---|
| ID | 5872748 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida GB-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010322 |
|---|
| Strand | - |
|---|
| Start bp | 5503627 |
|---|
| End bp | 5504373 |
|---|
| Gene Length | 747 bp |
|---|
| Protein Length | 248 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 641550071 |
|---|
| Product | RNA methyltransferase |
|---|
| Protein accession | YP_001671155 |
|---|
| Protein GI | 167035924 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0566] rRNA methylases |
|---|
| TIGRFAM ID | [TIGR00186] rRNA methylase, putative, group 3 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 33 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.0000134443 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAGTCAGC TGGAAAAGAT CTACGGCGTG CACGCCGTGC AGGCATTGCT GCAGCACCAT
CCAAAGCGGG TCAAGCAGAT CTGGCTGTCG GAAGGGCGCA GCGAGCCACG CCTCGAAACC
TTGCTGGCGC TGGCCGCGGA GAACCGCGTG CCGGTCGGCC AGGCCGAGCG CCGTGAGTTG
GATGCCTGGG TAGAGGGCGT GCATCAGGGC GTGGTCGCCG AGGTGAGCCC GAGCCAGGTA
TGGGGCGAGT TGATGCTCGA GGAGTTGCTC GAGCGCACTG AAACGCCGCC GCTGATCCTG
GTGCTGGACG GTGTCACCGA TCCGCACAAC CTTGGCGCTT GCCTGCGCAC GGCCGATGCG
GCGGGTGCCA CGGCAGTGAT CGTGCCCAAG GACAAATCTG CAACGCTGAC GCCGGTTGTG
CGCAAGGTGG CATGCGGTGC GGCGGAAGTG ATCCCGCTGG TGGCCGTGAC CAACCTGGCG
CGTACCCTGG AAAAGCTGCA GCAGCGTGGC TTGTGGGTAG TGGGTACCGC TGGCGAGGCC
GAGCAGGAGA TCTACCAGCA GGACCTGACC GGCCCCCTGG TGGTGATCAT GGGCGCAGAA
GGCAAGGGCA TGCGCCGTCT CACCCGCGAG CATTGCGATT TTCTGGTGAA ATTGCCGATG
GCTGGCAGCG TCAGCAGCCT GAACGTGTCG GTTGCGACCG GGGTTTGCCT GTTCGAAGCG
GTGCGTCAGC GTCAAGCCAA GCGCTGA
|
|---|
| Protein sequence | MSQLEKIYGV HAVQALLQHH PKRVKQIWLS EGRSEPRLET LLALAAENRV PVGQAERREL
DAWVEGVHQG VVAEVSPSQV WGELMLEELL ERTETPPLIL VLDGVTDPHN LGACLRTADA
AGATAVIVPK DKSATLTPVV RKVACGAAEV IPLVAVTNLA RTLEKLQQRG LWVVGTAGEA
EQEIYQQDLT GPLVVIMGAE GKGMRRLTRE HCDFLVKLPM AGSVSSLNVS VATGVCLFEA
VRQRQAKR
|
|---|
| |