| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_4916 |
|---|
| Symbol | |
|---|
| ID | 5872729 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida GB-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010322 |
|---|
| Strand | + |
|---|
| Start bp | 5483631 |
|---|
| End bp | 5484266 |
|---|
| Gene Length | 636 bp |
|---|
| Protein Length | 211 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 641550052 |
|---|
| Product | TetR family transcriptional regulator |
|---|
| Protein accession | YP_001671136 |
|---|
| Protein GI | 167035905 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1309] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.00715752 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 6 |
|---|
| Fosmid unclonability p-value | 0.000000000695443 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGCTACCGC GCGCCGAACA GAAGCTTCAG ACCCGCCAGG CCCTGCTCGA CGCAGCCTGC
CTGCTCATGG AGAGTGGCCG TGGTTTCGGC AGTGTCAGCC TGCGCGAGGT GGCGAAGACC
GCTGGCATCG TACCGACCGG CTTCTACCGG CATTTTTCCG ACATGGATGC CCTGGGCCTG
GCCTTGGTGG CCGAAATCGA CACCACCTTC CGCCAGACCA TCCGCCTGGT GCGGCAAAAC
GAATTCGAAC TGGGCGGCAT CACCGACGCT TCGGTGCGCA TCTTCCTCGA CGTGGTAGCC
GCCCACCGCG CGCAGTTCCT GTTCCTGGCC CGCGAACAGT ACGGCGGTTC GCAGGCCGTG
CGCCAGGCCA TTGCCCGCCT GCGCCAGGAC ATAAGCGATG ACCTGGCCAC CGACCTTGCG
CGCATGAAGC GCTGGCAGCA CCTGGACAGC GCCGCGCTGG CGGTGATGGC CGACCTGGTA
GTGAAGACCG TGTTCGCCAC CCTGCCCGAA CTTATCGACA GCCCGGAAGC AGGTTACCCA
CAGGCGCTGA CGCCGCAGGA AAAGATCACC CAGCAGTTGC GCTTCATCTT CGTCGGGGCG
CGGCATTGGC AGGGCTTGGG CAACCCTCAA CCCTAG
|
|---|
| Protein sequence | MLPRAEQKLQ TRQALLDAAC LLMESGRGFG SVSLREVAKT AGIVPTGFYR HFSDMDALGL
ALVAEIDTTF RQTIRLVRQN EFELGGITDA SVRIFLDVVA AHRAQFLFLA REQYGGSQAV
RQAIARLRQD ISDDLATDLA RMKRWQHLDS AALAVMADLV VKTVFATLPE LIDSPEAGYP
QALTPQEKIT QQLRFIFVGA RHWQGLGNPQ P
|
|---|
| |