| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_4778 |
|---|
| Symbol | |
|---|
| ID | 5872592 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida GB-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010322 |
|---|
| Strand | + |
|---|
| Start bp | 5343989 |
|---|
| End bp | 5345230 |
|---|
| Gene Length | 1242 bp |
|---|
| Protein Length | 413 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 641549916 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001671000 |
|---|
| Protein GI | 167035769 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG2081] Predicted flavoproteins |
|---|
| TIGRFAM ID | [TIGR00275] flavoprotein, HI0933 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.000000103411 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 43 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCCGATC TGAACCCCGC ATCCTCTCCC CTCGCTGTCG TCATCGGTGG CGGCCCTGCC
GGCTTGATGG CTGCCGAAGC ACTGGCCCAG GCAGGCCTGT CAGTCGAGGT GTTCGATGCC
ATGCCTTCGG TTGGGCGCAA GTTCCTGCTG GCAGGCGTCG GCGGCATGAA CATCACCCAT
TCCGAGCCCT ACTCGGCGTT CGTGGCCCGC TATGCCGAAC GCCAGGGCGA GATCGAGGCG
TTGCTGCGCG ACTTCGATGC GGACGCATTA CGCCAATGGA TTCACGGCCT GGGCATCGAA
ACCTTCGTCG GCACCTCGGG CCGGGTGTTT CCGACCGACA TGAAAGCCGC GCCGCTGCTA
CGTGCCTGGC TCAAGCGCCT GCGTGACAAC GGGGTAGTTA TCCACACCCG TCATCGCTGG
CTGGGCTGGA ACTCCGATGG CGCGTTGCGG ATTGCTTATC CACAGGGCGA ACGGCTGGTG
AAAGCCGCCG TCGTGGTGCT GGCACTGGGT GGCGCCAGCT GGGCGCGACT GGGCTCCGAC
GGCAGTTGGC AAGCGCTGCT GGCCGAACGG GCTGTGGATA TCTCGCCTTT GCAGCCGAGC
AACTGCGGTT TTGAAGTGGA CAGTTGGAGC GCCTTGCTCA AGGACAAGTT CGCCGGCGCG
CCGCTGAAGA ACATTGCCCT CAGCGTACCG GGCAGTGCAC CGCGCAAAGG CGAGTTCATC
CTCACCGCGC AAGGTGTGGA GGGCAGCCTG GTGTATGCCT GGTCGGCACC GCTGCGCGAG
GCCATCAACC GTGACGGCCG TGGGCTGTTG TTGCTCGACC TGCTGCCGGA CAAGCCTGTG
GACAAAATTG CCCAGGCACT GGCCAAGCCA CGCGGTTCAC GCTCCATGGC CAAGCATCTG
CACAGCCAGT TGGGTATCGA TGGGGTCAAG GCGGCACTGC TGCGGGAGCT GACCGATCAC
GCGAGCTTTG CCGACCCGCA GGCGCTGGCC CGATCGATCA AGGCATTGCC GATCACGTTG
GTGCGTACAC GGCCGCTGGA TGAAGCGATC AGTAGCGCCG GCGGGGTGCG TTTCGAGGGG
CTGGATGAGG GGTTGATGGT CAAGGGCATG CCGGGGGTGT TCTGTGCCGG CGAAATGCTG
GACTGGGAGG CGCCGACCGG GGGGTATTTG CTAACGGCGT GCTTTGCCAG CGGCTTGCGC
GCCGGGCGAG CGGCGGCGGA TTGGATTAAG CCGGTTTCCT GA
|
|---|
| Protein sequence | MPDLNPASSP LAVVIGGGPA GLMAAEALAQ AGLSVEVFDA MPSVGRKFLL AGVGGMNITH
SEPYSAFVAR YAERQGEIEA LLRDFDADAL RQWIHGLGIE TFVGTSGRVF PTDMKAAPLL
RAWLKRLRDN GVVIHTRHRW LGWNSDGALR IAYPQGERLV KAAVVVLALG GASWARLGSD
GSWQALLAER AVDISPLQPS NCGFEVDSWS ALLKDKFAGA PLKNIALSVP GSAPRKGEFI
LTAQGVEGSL VYAWSAPLRE AINRDGRGLL LLDLLPDKPV DKIAQALAKP RGSRSMAKHL
HSQLGIDGVK AALLRELTDH ASFADPQALA RSIKALPITL VRTRPLDEAI SSAGGVRFEG
LDEGLMVKGM PGVFCAGEML DWEAPTGGYL LTACFASGLR AGRAAADWIK PVS
|
|---|
| |