| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_4707 |
|---|
| Symbol | |
|---|
| ID | 5872518 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida GB-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010322 |
|---|
| Strand | - |
|---|
| Start bp | 5260474 |
|---|
| End bp | 5262579 |
|---|
| Gene Length | 2106 bp |
|---|
| Protein Length | 701 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 641549843 |
|---|
| Product | polynucleotide phosphorylase/polyadenylase |
|---|
| Protein accession | YP_001670929 |
|---|
| Protein GI | 167035698 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG1185] Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) |
|---|
| TIGRFAM ID | [TIGR03591] polyribonucleotide nucleotidyltransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.181629 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 0.111929 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGAACCCGG TAATCAAGAC TTTCCAGTTC GGTCAATCGA CCGTTACTCT CGAAACGGGC
CGTATCGCCC GTCAGGCAAC CGGCGCCGTG CTGGTTACCG TCGACAACGA CGTCACCGTG
CTGGTGACCG TGGTAGGCGC CAAACAGGCT GATCCAGGCA AGGGCTTCTT CCCGCTGTCG
GTTCACTACC AGGAAAAGAC CTACGCCGCC GGCAAGATCC CGGGTGGCTT CTTCAAGCGT
GAAGGCCGTC CTTCCGAGAA AGAGACGCTG ACCTCGCGCC TGATCGACCG TCCGATCCGT
CCGCTGTTCC CGGAAGGCTT CATGAACGAA GTGCAGGTTG TCTGCACCGT GGTTTCCACC
AGCAAGAAGA CCGACCCGGA CATCGCTGCG ATGATCGGTA CCTCGGCTGC CCTGGCCATT
TCCGGCATCC CGTTCGAAGG CCCGATCGGC GCCGCTCGCG TTGCTTTCCA CGAAAGCACC
GGCTACCTGC TGAACCCGAC CTACGAGCAA CTGGCTGCCT CGAGCCTGGA CATGGTCGTT
GCCGGTACCG CCGACGCCGT ACTGATGGTT GAATCGGAAG CTCAAGAGCT GACCGAAGAC
CAGATGCTGG GCGCTGTACT GTTCGCCCAC GACGAATTCC AGGCTGTGAT CCAGGCTGTC
AAAGAGCTGG CCGCCGAAGC TGCCAAGCCG ACCTGGGACT GGAAACCTGC AGTTGCCAAC
ACCGAGCTGT TCAACGCTAT CCGCGCCGAG TTCGGCGAAG CGGTTTCGCA GGGCTACACC
ATCACCGTCA AGGCCGACCG CTATGCGCGT CTGGGCGAGC TGCGCGATCA GGCGATCGCC
AAGTTCTCCG GTGAAGAAGG CCAGCCTTCG GCTTCCGAAG TGAAAGAAAT CTTCGGCGAA
ATCGAATACC GCACCGTTCG CGAAAACATC GTAAACGGCA AGCCACGTAT CGACGGTCGC
GACACCAAGA CCGTTCGCCC GCTGAACATC GAAGTCGGCG TGCTGCCGAA GACTCACGGT
TCGGCGCTGT TCACCCGTGG CGAAACCCAG GCCCTGGTCG TTGCGACCCT GGGTACTGCC
CGTGACGCCC AGCTGCTGGA CACCCTCGAA GGCGAGAAGA AAGACCCCTT CATGCTGCAC
TACAACTTCC CGCCGTTCTC GGTAGGTGAG TGCGGCCGTA TGGGCGGTGC TGGCCGTCGC
GAAATCGGCC ACGGCCGTCT GGCCCGTCGT TCGGTTCAGG CCATGCTGCC TGCCGCTGAC
GTGTTCCCGT ACACCATTCG CGTGGTTTCG GAAATCACCG AATCCAACGG CTCCAGCTCC
ATGGCTTCGG TCTGTGGTGC TTCCCTGGCG CTGATGGACG CTGGTGTGCC GATGAAGGCA
CCGGTTGCCG GTATCGCCAT GGGCCTGGTC AAGGAAGGGG AGAAGTTCGC GGTCCTGACC
GACATCCTGG GTGACGAAGA CCACCTGGGC GACATGGACT TCAAAGTAGC CGGTACCGCC
AAGGGCGTGA CCGCGCTGCA GATGGACATC AAGATCAACG GCATCACTGA AGAGATCATG
GAAATCGCCC TGGGCCAAGC CCTGGAAGCG CGCCTGAACA TCCTCGGTCA GATGAACCAG
ATCATTGGCC AGTCGCGTAC CGAACTGTCG GCCAACGCCC CGACCATGAT CGCGATGAAG
ATCGATACCG ACAAGATTCG TGACGTTATC GGCAAAGGCG GCGCCACCAT TCGCGCCATC
TGCGAAGAGA CCAAGGCCTC GATCGACATC GAAGACGACG GCTCGATCAA GATCTTCGGC
GAAACCAAGG AAGCGGCAGA GGCTGCCAAG CAGCGCATCC TGGGCATCAC CGCAGAGGCC
GAGATCGGCA AGATCTACGT CGGCAAGGTT GAGCGCATCG TCGACTTCGG CGCCTTCGTC
AACATCCTGC CTGGCAAGGA CGGCCTGGTG CACATCTCCA TGCTGAGCGA TGCTCGCGTC
GAGAAAGTCA CCGACATCCT CAAAGAAGGC CAGGAAGTCG AAGTGCTGGT ACTGGACGTG
GACAACCGCG GCCGTATCAA GCTGTCGATC AAGGACGTAG CTGCGGCCAA GGCCTCGGGC
GTTTAA
|
|---|
| Protein sequence | MNPVIKTFQF GQSTVTLETG RIARQATGAV LVTVDNDVTV LVTVVGAKQA DPGKGFFPLS
VHYQEKTYAA GKIPGGFFKR EGRPSEKETL TSRLIDRPIR PLFPEGFMNE VQVVCTVVST
SKKTDPDIAA MIGTSAALAI SGIPFEGPIG AARVAFHEST GYLLNPTYEQ LAASSLDMVV
AGTADAVLMV ESEAQELTED QMLGAVLFAH DEFQAVIQAV KELAAEAAKP TWDWKPAVAN
TELFNAIRAE FGEAVSQGYT ITVKADRYAR LGELRDQAIA KFSGEEGQPS ASEVKEIFGE
IEYRTVRENI VNGKPRIDGR DTKTVRPLNI EVGVLPKTHG SALFTRGETQ ALVVATLGTA
RDAQLLDTLE GEKKDPFMLH YNFPPFSVGE CGRMGGAGRR EIGHGRLARR SVQAMLPAAD
VFPYTIRVVS EITESNGSSS MASVCGASLA LMDAGVPMKA PVAGIAMGLV KEGEKFAVLT
DILGDEDHLG DMDFKVAGTA KGVTALQMDI KINGITEEIM EIALGQALEA RLNILGQMNQ
IIGQSRTELS ANAPTMIAMK IDTDKIRDVI GKGGATIRAI CEETKASIDI EDDGSIKIFG
ETKEAAEAAK QRILGITAEA EIGKIYVGKV ERIVDFGAFV NILPGKDGLV HISMLSDARV
EKVTDILKEG QEVEVLVLDV DNRGRIKLSI KDVAAAKASG V
|
|---|
| |