| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_4607 |
|---|
| Symbol | |
|---|
| ID | 5872415 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida GB-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010322 |
|---|
| Strand | - |
|---|
| Start bp | 5147927 |
|---|
| End bp | 5148841 |
|---|
| Gene Length | 915 bp |
|---|
| Protein Length | 304 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 641549740 |
|---|
| Product | short-chain dehydrogenase/reductase SDR |
|---|
| Protein accession | YP_001670829 |
|---|
| Protein GI | 167035598 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
|---|
| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 29 |
|---|
| Plasmid unclonability p-value | 0.707593 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 47 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGAGC CCGTCCATTT GCAAGATCGC GTGGTGATCG TCACCGGCGC CGGTGGCGGC
CTGGGCCGCG CCCACGCGCT GCTGTTCGCC GCGCGGGGTG CCAGGGTGGT GGTCAACGAC
CTTGGCGGTT CTACCCACGG GGAAGGTGCC AGCGCCTCGG CCGCCGACCG GGTGGTGGAG
GAGATCCGCG CCGCCGGTGG CAGCGCCATC GCCAACCATG ACTCGGTCAG CCACGGTGCA
CGTATCGTCG AGCAGGCGCT GGACACGTTC GGCCGGGTCG ATGTGCTGGT GAACAACGCT
GGCATCCTGC GCGACAAGAC CTTTCACAAG ATGGACGACA GCGATTGGGA GCAGGTGTAC
CAGGTGCATG TCGAAGGGGC CTTCAAAGTC ACCCGCGCCG CCTGGCCACA CTTGCGCGAG
CAAAACTGGG GGCGGGTGAT CTTCACGGCT TCCACCTCGG GTATCTACGG CAACTTTGGG
CAGGCCAATT ACGGCATGGC CAAGCTGGGC CTGTACGGGT TGACCCGCAC GCTGGCCATC
GAAGGGCGCA AGCACGGCAT CCTGGTCAAC GCCATTGCTC CCACGGGCGG TACCCGCATG
ACCGAGGGGC TGATCCCACC CCAGGTATTC GAGCGGCTCA AGCCCGAGCT GGTCAGCCCA
CTGGTGGTTT ACCTGGGCAG CGAGCAGTGC CAGGGCACGG GGGAGCTGTT CGAGGTGGGC
GGCGGCTGGG TGGGCAAGGT GCGTTGGGAG CGCAGCCTGG GAGTGGGTTT TGATCCGCGC
GAGGGGTTTA CCCCGGAGCA GGTGGCGGAG CACTGGGCGC AAATCGGCGA CTTTGACGGG
GCGGTGCATC CTCAGGACAG TTTGCAGGCA TTGCAGCAGA TGATGGCGAA CCTGCAGAAA
TACCCGCTGG GCTGA
|
|---|
| Protein sequence | MSEPVHLQDR VVIVTGAGGG LGRAHALLFA ARGARVVVND LGGSTHGEGA SASAADRVVE
EIRAAGGSAI ANHDSVSHGA RIVEQALDTF GRVDVLVNNA GILRDKTFHK MDDSDWEQVY
QVHVEGAFKV TRAAWPHLRE QNWGRVIFTA STSGIYGNFG QANYGMAKLG LYGLTRTLAI
EGRKHGILVN AIAPTGGTRM TEGLIPPQVF ERLKPELVSP LVVYLGSEQC QGTGELFEVG
GGWVGKVRWE RSLGVGFDPR EGFTPEQVAE HWAQIGDFDG AVHPQDSLQA LQQMMANLQK
YPLG
|
|---|
| |