Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PputGB1_4583 |
Symbol | |
ID | 5872391 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida GB-1 |
Kingdom | Bacteria |
Replicon accession | NC_010322 |
Strand | - |
Start bp | 5123447 |
End bp | 5124976 |
Gene Length | 1530 bp |
Protein Length | 509 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 641549716 |
Product | RND efflux system outer membrane lipoprotein |
Protein accession | YP_001670805 |
Protein GI | 167035574 |
COG category | [M] Cell wall/membrane/envelope biogenesis [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1538] Outer membrane protein |
TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
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Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 0.244926 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 47 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGCCGCGTC GCATCATCAG AACGCTCAAT GCGTTCAGTG CCTGTGCCCT TGCCCTCACC TTGAGTGGCT GTATCGGAAC CTGGGGCATC GCCCCGCAAA GCAAGACGCT GCAAGCCAAT ACCTTGACCA CCGACGCGGC CATACGCGAA GCCGCGACCG ACGCCCATTG GCCTGACCAG CAGTGGTGGC ACGCCTATGG CGACCCGCAG CTGGACCGCT GGATTGCCCT GGCCGTGGCC GGCAGCCCAA GCCTGGCCAT GGCCGCGGCG CGGGTGCGCG AAGCCAAGGC CATGGCTGGC GTGGTCGAGT CGGCGGAAAA GCTCCAGGCC AACGGCCAGG CCACGCTCAA GCGCCACAAC TGGCCTGAAG ACCAGTTCTA CGGCCCTGGC GCGCTGTCGG GCGCCAACAC CTGGGACAAC AACGCTGCCA TTGGCTTCAG CTACGCCCTC GACCTGTGGG GGCGCGAGCG CAACGCCAGT GAGCAGGCCG TGGACCAGGC GCACATGAGC GTGGCCGAAG CCCGCCAGGC GCAACTGGAG CTGCAGAACA ACGTGGTGCG CGCCTACATC CAGCTGAGCC TGCACTTTGC CCAGCGCGAT ATCGTCAAGG CCGAACTGGA GCAGCAGGAG CAGATCCTGG CGCTGGCCAA GCGTCGCCTG GATGCCGGCA TCGGCACTCA CTTCGAAGTC AGCCAGGCCG AAGCGCCGCT GCCGGAAACC CACCGTCAGC TCGACAGCCT CGACGAAGAA ATTGCCCTGA CCCGCAACCA GCTGGCGGCG TTGGCTGGCA AAGGCCCGGG GGAGGGCGCA CAGTTGCAGC GCCCGACCCT GGCCCTGGCC GCGCCGCTGA AGCTGCCCTC GAACCTGCCT GCCGAACTGG TCGGCCAGCG CCCCGATGTG GTCGCCAGCC GCTGGCAGGT GGCCGCTCAA GCGCGTGGCA TCGATGTTGC CCATGCCGGC TTCTTCCCCA ACGTCGACCT GGTCGGCAGC CTGGGCTTCA TGGCTACCGG TGGTGGCCCG CTGGAGTTCC TGACCGGGCG CAAGTTCAAC TACAACGTCG GCCCGGCGAT CAGCTTGCCG ATCTTCGACG GTGGCCGCCT GCGTTCGGAG CTGGGCGTGG CCTCGGCGGG GTACGACGTA GCGGTGGCGC GCTACAACCA GACCGTGATT GGTGCGCTGA AGAACATTTC CGACCAGTTG ATCCGCCGCG AGTCGATGAA AGAGCAGTCG CACTTCGCGG CCGAGTCCGT CGCCGCAGCT CAGAAAACCT ACGACATCGC CATGGTCGCC TTCCAGCGCG GCCTTACCGA CTACCTGAAC GTGCTCAATG CGCAGACATT GCTGTTCCGC CAGCAGCAGG TGCAGCAACA GGTGCAGGCC GCCCGCCTGG TCGCCCATGC CGAGCTGGTC ACCGCCCTGG GCGGCGGCCT GCAGGCCGGC CAGGATGTGC CGAAGGAGGA ACGCCAGGCT GCGCCGAAAA CCCCGGCTAC CCTGGCCATT TTCGACAAGA AGCCGGATAA CGCCGAATGA
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Protein sequence | MPRRIIRTLN AFSACALALT LSGCIGTWGI APQSKTLQAN TLTTDAAIRE AATDAHWPDQ QWWHAYGDPQ LDRWIALAVA GSPSLAMAAA RVREAKAMAG VVESAEKLQA NGQATLKRHN WPEDQFYGPG ALSGANTWDN NAAIGFSYAL DLWGRERNAS EQAVDQAHMS VAEARQAQLE LQNNVVRAYI QLSLHFAQRD IVKAELEQQE QILALAKRRL DAGIGTHFEV SQAEAPLPET HRQLDSLDEE IALTRNQLAA LAGKGPGEGA QLQRPTLALA APLKLPSNLP AELVGQRPDV VASRWQVAAQ ARGIDVAHAG FFPNVDLVGS LGFMATGGGP LEFLTGRKFN YNVGPAISLP IFDGGRLRSE LGVASAGYDV AVARYNQTVI GALKNISDQL IRRESMKEQS HFAAESVAAA QKTYDIAMVA FQRGLTDYLN VLNAQTLLFR QQQVQQQVQA ARLVAHAELV TALGGGLQAG QDVPKEERQA APKTPATLAI FDKKPDNAE
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