| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_4576 |
|---|
| Symbol | |
|---|
| ID | 5872384 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida GB-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010322 |
|---|
| Strand | - |
|---|
| Start bp | 5115770 |
|---|
| End bp | 5116831 |
|---|
| Gene Length | 1062 bp |
|---|
| Protein Length | 353 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 641549709 |
|---|
| Product | secretion protein HlyD family protein |
|---|
| Protein accession | YP_001670798 |
|---|
| Protein GI | 167035567 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1566] Multidrug resistance efflux pump |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 31 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 39 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCAACA ACCGCAAAAC CCTGTTCATC GGCTCGGTGC TGGCCGTGGC CGTCCTGGCT
GGCATCGTCG GCCCCTGGAT GTTGGGCAGT GACCACCGCC AGAGCACCAA TGACGCCTAT
GTGATCGCCG ACTACACCGT GGTCGCGCCC AAAGTCGCCG GTTTCATCAA GGACGTGCTG
GTGGAAGACA ACCAGCAGGT CACCGCAGGC CAGTTGCTGG CGACCATCGA TGCCCGTGAC
TACCAGGCCG CGCTGGATGC CGCGCAGGCG CAGTTGCTGG TAGCCCAGGC GCAAAGCGCC
GATGCCCGTG CCACCCTGGA GCGCCAGGCG GCGCTGATTG CCCAGGCCGA GGCTGCTGTC
AAAGCGGCCC AGGCCGAAGC GGCGTTCGCC GACCATGAAG TCAACCGCTA CAGCCGCCTG
GCCGAGCAGG GCGCCGGTAC CGTGCAGAAC GCCCAACAGG CGCGCAGCGG TGTCGACCAG
GCCCGTGCTC GCCTGGCCAA TGCCCAGGCG GCGCTGGTGG CGGCGCGCAA GCAAGTGGAC
ATTCTCACCG CTCAGGTGGC CAGCGCCGAT GGCCAGCTCA AACGTGCCGA AGCGGGGCTG
GAAAAGGCTC AGCTCGACCT GTCCTACACC CGCATCACTG CACCGGTGGA CGGTATGGTC
GGCGAGCGTG CCCTGCGCGT CGGCGCCTAC GTCAACCCAG GCGCCCGCCT GCTGTCGGTG
GTGCCGTTGC AACAGGCCTA TGTGGTCGGC AATTTCCAGG AAACCCAGCT GACCCACGTG
CAACCGGGCC AGCCGGTGAG CATCAGCGTC GATACCTTCT CCGGCGAAAA GCTGCACGGC
CATGTAGAAA GTATCGCTCC CGCCACCGGC GTCACCTTCG CTGCCGTGAA ACCGGACAAC
GCCACCGGCA ACTTCACCAA GGTGGTGCAG CGCATCCCGG TGAAAATCGT CTTCGATGAC
GGGCAGCCGC TGCTCAGCCG CCTACGTGTG GGCATGTCGG TGGAAGCGAC CATCGACACC
CGTGGTGACA AGCTGGACGG CAAAGAGGTA AGTGCACGAT GA
|
|---|
| Protein sequence | MTNNRKTLFI GSVLAVAVLA GIVGPWMLGS DHRQSTNDAY VIADYTVVAP KVAGFIKDVL
VEDNQQVTAG QLLATIDARD YQAALDAAQA QLLVAQAQSA DARATLERQA ALIAQAEAAV
KAAQAEAAFA DHEVNRYSRL AEQGAGTVQN AQQARSGVDQ ARARLANAQA ALVAARKQVD
ILTAQVASAD GQLKRAEAGL EKAQLDLSYT RITAPVDGMV GERALRVGAY VNPGARLLSV
VPLQQAYVVG NFQETQLTHV QPGQPVSISV DTFSGEKLHG HVESIAPATG VTFAAVKPDN
ATGNFTKVVQ RIPVKIVFDD GQPLLSRLRV GMSVEATIDT RGDKLDGKEV SAR
|
|---|
| |