| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_4429 |
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| Symbol | |
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| ID | 5872237 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida GB-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010322 |
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| Strand | + |
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| Start bp | 4958902 |
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| End bp | 4960356 |
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| Gene Length | 1455 bp |
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| Protein Length | 484 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 641549564 |
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| Product | RND efflux system outer membrane lipoprotein |
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| Protein accession | YP_001670653 |
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| Protein GI | 167035422 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 0.305214 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 26 |
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| Fosmid unclonability p-value | 0.0579633 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCAAGT CTTTGTTGTC CCTGGCGGTA ACCGCTTTCA TTCTTGGCGG CTGCTCGCTG
ATCCCTGACT ACCAGACCCC GGAAGCGCCG GTGGCTGCGC AGTGGCCGCA AGGCCCTGCG
TACTCGCCAA CGCAATCGGC GGATGTTGCC GCCGCCGAAC AGGGCTGGCG CCAGTTCTTC
CACGATCCGG CACTGCAACA GCTGATCCAG ACCTCGCTGG TGAACAACCG CGACCTGCGC
GTCGCGGCGC TGAACCTGGA CGCCTACCGC GCGCAGTACC GCATTCAGCG TGCCGACCTG
TTCCCGGCGG TTTCGGCCAC CGGCAGCGGC AGCCGCCAGC GCGTCCCGGC GAACATGTCG
CAAACCGGTG AATCTGGCAT CACCAGCCAG TATTCGGCCA CCCTGGGTGT CAGCGCCTAC
GAGCTGGACC TGTTCGGCCG CGTGCGCAGC CTGACCGAGC AAGCCTTGGA AACCTATCTG
TCCAGCGAGC AGGCGCGTCG TTCCACGCAA ATCGCCCTGG TGGCCAGCGT GGCCAATGCC
TACTACACCT GGCAGGCCGA CCAGGCCCTG TTCAAGCTGA CCGAAGAAAC GCTGAAGACC
TACGAGGAAA GCTACAACCT CACCCGTCGC AGCAATGAAG TCGGCGTCGC TTCTGCACTC
GACGTCAGCC AGGCACGCAC CGCCGTGGAA GGCGCCCGGG TCAAGTACTC GCAGTATCAG
CGCCTGGTCG CCCAGGACGT CAACAGCCTG ACCGTGCTGC TGGGCACCGG CATTCCAGCC
GACCTGGCCA AGCCGCTGGA ACTCAATGCC GACCAGTTGG CCGAAGTGCC GGCCGGCCTG
CCGTCGGATA TCCTCCAGCG CCGCCCGGAC ATCCAGGAAG CCGAGCACCT GCTCAAGGCC
GCCAATGCCA ACATTGGCGC GGCCCGCGCA GCGTTCTTCC CGAGCATCAG CCTGACCGCC
AACGCGGGCA GCCTGAGCCC CGACATGGGC CACCTGTTCG CAGGCGGCCA GGGCACCTGG
CTGTTCCAGC CGCAGATCAA CCTGCCGATC TTCAACGCCG GCAGCCTGAA GGCCAGCCTG
GATTATTCGA AGATCCAGAA GGACATCAAC GTCGCCAAGT ACGAAAAAAC CATCCAGACC
GCCTTCCAGG AAGTCTCCGA TGGCCTGGCG GCGCGCAAGA CCTTCGAAGA GCAGCTGCAG
GCCCAGCGCG ACCTGGTGCA GGCGAACCAG GATTACTACC GCTTGGCCGA ACGCCGTTAT
CGCATCGGGA TCGACAGCAA CCTGACCTTC CTCGACGCCC AGCGCAACCT GTTCAGCGCC
CAACAGGCAC TGATCGGCGA CCGTCTTTCG CAGCTGACCA GCGAGGTCAA CCTGTACAAG
GCGCTCGGCG GTGGCTGGTA CGAGCAGACC GGGCAGGCCA ACCAGCAGGC ATCGGTGGAT
GCACCGAAAG GCTGA
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| Protein sequence | MTKSLLSLAV TAFILGGCSL IPDYQTPEAP VAAQWPQGPA YSPTQSADVA AAEQGWRQFF
HDPALQQLIQ TSLVNNRDLR VAALNLDAYR AQYRIQRADL FPAVSATGSG SRQRVPANMS
QTGESGITSQ YSATLGVSAY ELDLFGRVRS LTEQALETYL SSEQARRSTQ IALVASVANA
YYTWQADQAL FKLTEETLKT YEESYNLTRR SNEVGVASAL DVSQARTAVE GARVKYSQYQ
RLVAQDVNSL TVLLGTGIPA DLAKPLELNA DQLAEVPAGL PSDILQRRPD IQEAEHLLKA
ANANIGAARA AFFPSISLTA NAGSLSPDMG HLFAGGQGTW LFQPQINLPI FNAGSLKASL
DYSKIQKDIN VAKYEKTIQT AFQEVSDGLA ARKTFEEQLQ AQRDLVQANQ DYYRLAERRY
RIGIDSNLTF LDAQRNLFSA QQALIGDRLS QLTSEVNLYK ALGGGWYEQT GQANQQASVD
APKG
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