Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PputGB1_4342 |
Symbol | |
ID | 5872149 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida GB-1 |
Kingdom | Bacteria |
Replicon accession | NC_010322 |
Strand | + |
Start bp | 4858116 |
End bp | 4858862 |
Gene Length | 747 bp |
Protein Length | 248 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 641549476 |
Product | polar amino acid ABC transporter, inner membrane subunit |
Protein accession | YP_001670566 |
Protein GI | 167035335 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0765] ABC-type amino acid transport system, permease component |
TIGRFAM ID | [TIGR01726] amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family |
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Plasmid Coverage information |
Num covering plasmid clones | 30 |
Plasmid unclonability p-value | 0.695793 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 42 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAATTACA ACTGGGACTG GGGCGTGTTC TTCAAGTCCA CCGGCGTGGG CAGCGAAACC TATCTGGACT GGTACATCAC CGGCCTGGGC TGGACCATCG CCATCGCCAT CACCGCCTGG ATCATCGCGC TGCTGCTGGG GTCGGTCCTC GGTGTCATGC GTACCGTGCC GAACCGCCTG GTATCGGGCA TCGCCACCGC CTATGTGGAA CTGTTCCGCA ACGTGCCACT GCTGGTGCAG CTGTTCATCT GGTACTTCCT GGTACCAGAC TTGCTGCCCG AAGGCTTGCA GGAGTGGTTC AAGCAGGACC TCAACCCGAC CACCTCGGCA CTGATCAGCG TGGTCATCTG CCTGGGCCTG TTCACCGCAG CCCGTGTCTG CGAGCAAGTA CGTACCGGTA TTCAGGCGCT ACCCAAAGGC CAGGAAGCCG CTGCCCGCGC CATGGGCTTC AGCCTCCCGC AGATCTACAA CAACGTGCTG CTGCCGCAGG CTTACCGCAT CATCATTCCG CCGCTCACCT CCGAGTTTCT CAACGTCTTC AAGAACTCCT CGGTGGCGTC GCTGATCGGC CTGATGGAAC TGCTGGCGCA GACCAAGCAA ACCGCCGAAT TCTCCGCCAA CCTGTTCGAG GCGTTCACCT TGGCCACGCT GATCTACTTC ACCCTGAACA TGGGCCTGAT GCTGCTCATG CGCATGGTCG AGAAAAAAGT CGCCGTGCCC GGCCTGATCT CCGTGGGGGG CAAGTAA
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Protein sequence | MNYNWDWGVF FKSTGVGSET YLDWYITGLG WTIAIAITAW IIALLLGSVL GVMRTVPNRL VSGIATAYVE LFRNVPLLVQ LFIWYFLVPD LLPEGLQEWF KQDLNPTTSA LISVVICLGL FTAARVCEQV RTGIQALPKG QEAAARAMGF SLPQIYNNVL LPQAYRIIIP PLTSEFLNVF KNSSVASLIG LMELLAQTKQ TAEFSANLFE AFTLATLIYF TLNMGLMLLM RMVEKKVAVP GLISVGGK
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