Gene PputGB1_4307 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPputGB1_4307 
Symbol 
ID5872114 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida GB-1 
KingdomBacteria 
Replicon accessionNC_010322 
Strand
Start bp4819323 
End bp4820981 
Gene Length1659 bp 
Protein Length552 aa 
Translation table11 
GC content65% 
IMG OID641549441 
ProductATP-dependent DNA ligase 
Protein accessionYP_001670531 
Protein GI167035300 
COG category[L] Replication, recombination and repair 
COG ID[COG1793] ATP-dependent DNA ligase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones24 
Plasmid unclonability p-value0.66248 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones51 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAAGCCT TTGCCATGTT GTACCTGCGC CTGGACGCGA CTACCTCCAG CAACGCCAAG 
CTTGAGGCAC TGCGCGACTA CTTCGGCACA GCCCCCGCTA ACGACGCCGC CTGGGCAGTG
TACTTTCTTG CCGGGGGGCG CCCACGTCAG CTGGTGCCCA CCCGCCTTTT GCGTGAAATG
GCCACGGCCC TGGCCGGCCT GCCGGACTGG CTGTTCGAAG AAAGCTATCA GGCGGTGGGC
GACTTGGCCG AGACCATTTC GCTGCTGTTA CCGCAGCACA TCGATGGCAG CGAGGAAGGC
CTGGCCACTT GGGTAGAGCA GCACTTGCTG CCCCTGCGCG GGCTGCCACC CGAGCATATC
CGGCAGCGCT TGCCGGCGCT CTGGGCGCAG CTGGATCGCC CCAGCCTGAT GGTGTGCCTG
AAGCTGATCA CCGGGAGTTT TCGCGTGGGC GTGTCGAAGC TGCTGGTCAC CCGCGCCATG
GCGCAACTGG CCGGGCTGGA CGCCAAACGC GTAGCCCAGC GCCTGGTCGG TTACACCGAC
ATCAGCCATC GCCCCACGGC GGCCGACTAC CAGCAACTGA TCGCTCCAGA GACCGCCGAT
GAGCACAGCC AGCGTGGTGG GCAACCCTAC CCCTTCTTCC TGGCCCACCC GCTGCAAGCC
TCCACCGACC AGTTCGATAC CCTGCTCGGC CCCCCAAGCG ACTGGCAAAT CGAGTGGAAG
TGGGACGGCA TTCGCGCCCA AGTGGTCAAG CGCGAGGGCC AGTTGTGGGT CTGGTCGCGC
GGTGAGGAAC TGGTTACCGA GCGGTTCCCA GAACTGCACA GCCTGGCGCA GACATTGCCC
GATGGCGTTG TGCTCGACGG TGAGATTCTG GTTTGGAAGC CTGGTGATAC AGGGGCTGAA
CTGGCCGTGC AGCCTTTCGC CTTGCTACAG CAGCGCATCG GCCGCAAAAC GCTGGGCAAA
AAAATGCTGC ACGACGCGCC GGTGGTGCTG CAGGCCTACG ACCTGTTGGA GTGGCAAGGC
GAAGACTGGC GCAGCCGACC GCAGCACGAA CGCCGTAGCC AACTGGAGCG CTTGGTCGAT
GAGTACCCGC TTGCCCCCGT GCTGCTGTCG CCGCTGCTGA CAGGCCCGGA CTGGGCCGAC
TTTGCCCACC AGCGCGAGCT GTCGCGCAGC CTGGGTGTCG AGGGCCTGAT GCTCAAGCAG
CGCGAAGCCC TCTACGGCGT GGGGCGCACC AAGGATATGG GCACCTGGTG GAAGTGGAAG
ATCGACCCGT TCAGCGTCGA TGCCGTGCTG ATCTATGCCC AGCGTGGGCA TGGGCGACGG
GCTAGCCTGT ACAGCGACTA CACCTTTGCC GTGTGGGACG CCCCGGCTGG CACGCCAGGG
CGGGTGCTGG TGCCCTTTGC CAAGGCCTAT TCGGGGCTCA CTGACGAAGA AATGCGCAAG
GTCGATACCA TCATTCGCAA GACCACGGTG GAAACCTTTG GCCCGGTGCG CAGTGTGACG
CCAACGCTGG TGTTCGAGCT GGGCTTCGAA GGCATCGCCC TGTCTCGACG CCACAAAAGC
GGTATTGCCG TGCGCTTTCC GCGCATGCTG CGCTGGCGGC TGGACAAGCC GGTGGATGAG
GCAGATGACT TGGCGACCTT GCAGGCGCTA CTGGCCTGA
 
Protein sequence
MKAFAMLYLR LDATTSSNAK LEALRDYFGT APANDAAWAV YFLAGGRPRQ LVPTRLLREM 
ATALAGLPDW LFEESYQAVG DLAETISLLL PQHIDGSEEG LATWVEQHLL PLRGLPPEHI
RQRLPALWAQ LDRPSLMVCL KLITGSFRVG VSKLLVTRAM AQLAGLDAKR VAQRLVGYTD
ISHRPTAADY QQLIAPETAD EHSQRGGQPY PFFLAHPLQA STDQFDTLLG PPSDWQIEWK
WDGIRAQVVK REGQLWVWSR GEELVTERFP ELHSLAQTLP DGVVLDGEIL VWKPGDTGAE
LAVQPFALLQ QRIGRKTLGK KMLHDAPVVL QAYDLLEWQG EDWRSRPQHE RRSQLERLVD
EYPLAPVLLS PLLTGPDWAD FAHQRELSRS LGVEGLMLKQ REALYGVGRT KDMGTWWKWK
IDPFSVDAVL IYAQRGHGRR ASLYSDYTFA VWDAPAGTPG RVLVPFAKAY SGLTDEEMRK
VDTIIRKTTV ETFGPVRSVT PTLVFELGFE GIALSRRHKS GIAVRFPRML RWRLDKPVDE
ADDLATLQAL LA