Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PputGB1_4307 |
Symbol | |
ID | 5872114 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida GB-1 |
Kingdom | Bacteria |
Replicon accession | NC_010322 |
Strand | + |
Start bp | 4819323 |
End bp | 4820981 |
Gene Length | 1659 bp |
Protein Length | 552 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 641549441 |
Product | ATP-dependent DNA ligase |
Protein accession | YP_001670531 |
Protein GI | 167035300 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG1793] ATP-dependent DNA ligase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 24 |
Plasmid unclonability p-value | 0.66248 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 51 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAAGCCT TTGCCATGTT GTACCTGCGC CTGGACGCGA CTACCTCCAG CAACGCCAAG CTTGAGGCAC TGCGCGACTA CTTCGGCACA GCCCCCGCTA ACGACGCCGC CTGGGCAGTG TACTTTCTTG CCGGGGGGCG CCCACGTCAG CTGGTGCCCA CCCGCCTTTT GCGTGAAATG GCCACGGCCC TGGCCGGCCT GCCGGACTGG CTGTTCGAAG AAAGCTATCA GGCGGTGGGC GACTTGGCCG AGACCATTTC GCTGCTGTTA CCGCAGCACA TCGATGGCAG CGAGGAAGGC CTGGCCACTT GGGTAGAGCA GCACTTGCTG CCCCTGCGCG GGCTGCCACC CGAGCATATC CGGCAGCGCT TGCCGGCGCT CTGGGCGCAG CTGGATCGCC CCAGCCTGAT GGTGTGCCTG AAGCTGATCA CCGGGAGTTT TCGCGTGGGC GTGTCGAAGC TGCTGGTCAC CCGCGCCATG GCGCAACTGG CCGGGCTGGA CGCCAAACGC GTAGCCCAGC GCCTGGTCGG TTACACCGAC ATCAGCCATC GCCCCACGGC GGCCGACTAC CAGCAACTGA TCGCTCCAGA GACCGCCGAT GAGCACAGCC AGCGTGGTGG GCAACCCTAC CCCTTCTTCC TGGCCCACCC GCTGCAAGCC TCCACCGACC AGTTCGATAC CCTGCTCGGC CCCCCAAGCG ACTGGCAAAT CGAGTGGAAG TGGGACGGCA TTCGCGCCCA AGTGGTCAAG CGCGAGGGCC AGTTGTGGGT CTGGTCGCGC GGTGAGGAAC TGGTTACCGA GCGGTTCCCA GAACTGCACA GCCTGGCGCA GACATTGCCC GATGGCGTTG TGCTCGACGG TGAGATTCTG GTTTGGAAGC CTGGTGATAC AGGGGCTGAA CTGGCCGTGC AGCCTTTCGC CTTGCTACAG CAGCGCATCG GCCGCAAAAC GCTGGGCAAA AAAATGCTGC ACGACGCGCC GGTGGTGCTG CAGGCCTACG ACCTGTTGGA GTGGCAAGGC GAAGACTGGC GCAGCCGACC GCAGCACGAA CGCCGTAGCC AACTGGAGCG CTTGGTCGAT GAGTACCCGC TTGCCCCCGT GCTGCTGTCG CCGCTGCTGA CAGGCCCGGA CTGGGCCGAC TTTGCCCACC AGCGCGAGCT GTCGCGCAGC CTGGGTGTCG AGGGCCTGAT GCTCAAGCAG CGCGAAGCCC TCTACGGCGT GGGGCGCACC AAGGATATGG GCACCTGGTG GAAGTGGAAG ATCGACCCGT TCAGCGTCGA TGCCGTGCTG ATCTATGCCC AGCGTGGGCA TGGGCGACGG GCTAGCCTGT ACAGCGACTA CACCTTTGCC GTGTGGGACG CCCCGGCTGG CACGCCAGGG CGGGTGCTGG TGCCCTTTGC CAAGGCCTAT TCGGGGCTCA CTGACGAAGA AATGCGCAAG GTCGATACCA TCATTCGCAA GACCACGGTG GAAACCTTTG GCCCGGTGCG CAGTGTGACG CCAACGCTGG TGTTCGAGCT GGGCTTCGAA GGCATCGCCC TGTCTCGACG CCACAAAAGC GGTATTGCCG TGCGCTTTCC GCGCATGCTG CGCTGGCGGC TGGACAAGCC GGTGGATGAG GCAGATGACT TGGCGACCTT GCAGGCGCTA CTGGCCTGA
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Protein sequence | MKAFAMLYLR LDATTSSNAK LEALRDYFGT APANDAAWAV YFLAGGRPRQ LVPTRLLREM ATALAGLPDW LFEESYQAVG DLAETISLLL PQHIDGSEEG LATWVEQHLL PLRGLPPEHI RQRLPALWAQ LDRPSLMVCL KLITGSFRVG VSKLLVTRAM AQLAGLDAKR VAQRLVGYTD ISHRPTAADY QQLIAPETAD EHSQRGGQPY PFFLAHPLQA STDQFDTLLG PPSDWQIEWK WDGIRAQVVK REGQLWVWSR GEELVTERFP ELHSLAQTLP DGVVLDGEIL VWKPGDTGAE LAVQPFALLQ QRIGRKTLGK KMLHDAPVVL QAYDLLEWQG EDWRSRPQHE RRSQLERLVD EYPLAPVLLS PLLTGPDWAD FAHQRELSRS LGVEGLMLKQ REALYGVGRT KDMGTWWKWK IDPFSVDAVL IYAQRGHGRR ASLYSDYTFA VWDAPAGTPG RVLVPFAKAY SGLTDEEMRK VDTIIRKTTV ETFGPVRSVT PTLVFELGFE GIALSRRHKS GIAVRFPRML RWRLDKPVDE ADDLATLQAL LA
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