| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_4261 |
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| Symbol | |
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| ID | 5872068 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida GB-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010322 |
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| Strand | + |
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| Start bp | 4771112 |
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| End bp | 4773697 |
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| Gene Length | 2586 bp |
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| Protein Length | 861 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 641549395 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_001670485 |
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| Protein GI | 167035254 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.329613 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 33 |
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| Fosmid unclonability p-value | 0.598513 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCCAGGA CCGCCAACCT TCCACCCGCA AGCCCCGCAC CACGCTTTCA GGTGCGCCAC
CTGATTGCCG GTTTCAGCAC AGTGTTCGGC CTGGCCTGCC TGGTCATTCT CGGAGCTCTG
TTCAATATCG CGACCACGCT CGACCAGCAG GAGCGCCAAC GCAGCGCCTT CCATGCAACC
CAGGCGCTGG AACAACGGTT GCTCGCCTCG CGCCAGTTTC TGTCCAGCTA TGCCGTATGG
GATGCAGCCT TCGAGCACCT GGCAGGTGAT GTCGACTGGC ACTGGGCCTA CGAAGAAAAA
AATGTAGGTG AGTCGCTGTA CAGCGCCAGC GGCTACGAAG GGGTGTTTGT GCTGGAAGAC
GACCGTACCA CCTATGCCTT GTTCAAAGGC CAGCCCAGCC AGGCCGGCGC CAACACTTAT
ATAGACGCAC CGCTCCAGCC GATCATTGAC CAGGCCCGTG CGGCGGCAAT TGCGCGCGAG
CAGGTCACCC ACTTCGTGTT GTTCAATGGC TGGCCGGCCG TACTCAGTGC AGCGGCCGTG
CGCCCTGACC GCGACGTCAC CGACAGCGAG GTGAGCCAGG CGCCAGTGAT GCTGTTCGTC
GACCAGCTTA CCGAAGAAAA ACTGGCGCAG CTGGGCAAAG GTGCCGGCCT GACGGGCATG
CACGTGGAGA AGGAAGATAA ACAGCAGCAT GGCCACCTGC GTATCGACCT GGGCGACACC
GGCTATCACC TGTCCTGGAG CAGCCCGCTG CCTGGGCACC AACTCTTGTG GGCAGTATTG
CCAGCTCTGT TGAGCGTGCT GCTGATACTC GGCTTGGTCA TGCTGTACCT GTGCCGCCAT
GCCTTGCGCA GCTCACGAGC AGTCGGCCTG ACCCTGCTCC ACCTGCAACA GAGCAACCAG
GCACTGGAGG CCAGCGAGCA ACGTTTTCGC GCGGTAGCCG AGTCGGCATC CGACTGGATC
TGGGAAACCG ACCGGCAACA ACGCCTGACC TACCTGTCGC AACGCTTTGC CAACGTCACC
GGCTACCCGG TAGACGACTG GCTGGGCCAC CCGCTCAACC AGCTGCTGGC CTGCGATACC
ACACCGTTGT CGCCCTGGCT GGACGTATTG ACTACCGCCG ACCCGCAGCA GTTGGCCAAC
CTGCGGTGCA CCTACCGAGA CCCGAATGGC CAAAACCGTT ATTGCCGGAT TTCCGCCCGC
GCCATCTGGC ACGACGGCAA GGCGCTTGGC TTTCGAGGAA CGGCCAGCGA TATAACCGAC
GAAGTCGACG CCCACGCGCG CATCCAGCAC CTGTCGCTGC ACGACCCACT GACCGGGCTG
GCCAACCGCA ACAAGCTGGC CAGGCACCTG GAACAGGCAC TGCTTCGCGG CAATGACTCA
CCGCCGCTCA CCCTGCTGCT GCTGGACCTG GACAACTTCA AGCCGATCAA CGACTCGCTC
GGCCATGCCG CTGGCGATGC CGTGCTACAA GAAGTGGCAA CGCGCCTGCG CGACACCACC
CGCGATGGCG ACCTGGTCGC GCGCCTGGGC GGCGACGAGT TCATCTTGGT ACTCGGCGGC
ATGGACAACC GTAGCGAAAT CGACCGCTTC TGTGCGCGGC TGATTGGCCT GCTGCAGCAA
CCCATCATCT TCGACGGCCA GCAGTTGCAC ATTGGCGCCA GTATTGGCGT TGCCCAGACC
CGCACTCAAG GCTTCGATGC CGGCGAGCTG ATTCGCTGCG CCGACATTGC CCTGTACCAG
GCCAAGGCCG ACGGCAAGAA CACCTGGCGC TACTTCGCTG CCGAAATGAA CCAGCAAATC
CAGTACCGTC GCCAATTGGA GAACGACCTG CGCCGGGCTT TGCGCAATCA GGAGTTCGTG
TTGCATTACC AGCCGCGCTA CCGCCTCGGC GACCTGCGCA TCGTCGGAGT CGAAGCGTTG
CTGCGCTGGC AGCACCCACA GGAAGGGTTG CTGGGGCCGG ATACCTTCAT CCCGCTGGCC
GAGCAGAGCG ACATCATCGT TGCGCTGGGC CGCTGGGTAC TGCGCGAAGC CTGCCGTACC
GCCCATGACT GGCCCAACGA TGTTCTGGTT TCGGTGAACC TGTCGCCTGC GCAGTTCCTG
CGCAGCGATG TGGTGGCCGA CGTGCGCGAG ATATTGCTGG ACACCGCCTT CCCGGCCCAG
CGTCTGGAGC TGGAAATTAC CGAGAACGTG ATGCTCAACG ACATCGAGGG CGCGCTGGGC
ACCATGCTGT CGCTCAAAGA GTTGGGCGTG CGCCTGAACA TGGACGATTT CGGTACGGGC
TATTCGTCGC TGGGCTACCT GCGTACCTAC CCGTTCGACA GCATCAAGAT CGACAAGCGC
TTCATCAGCG GCCTGAACAA CAACGGCGGG AGCGACCGCG CCGTGGTCCA GGCCATCATC
AATCTCGGTG AAGCGATGGG GCTGACAGTG ACAGCCGAGG GTGTAGAGAG CGAACAGCAG
CTCAAGGCGC TGGAAAAGGA CCGCTGCCAT GAAGTGCAGG GCTACTACAT GAGCCGCCCG
TTGGACAGTG CAGGGCTGCA GGCGCTGCTG CAGCAAACAT CCAAAAACAC AGCACAGCCC
TTGTAG
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| Protein sequence | MARTANLPPA SPAPRFQVRH LIAGFSTVFG LACLVILGAL FNIATTLDQQ ERQRSAFHAT
QALEQRLLAS RQFLSSYAVW DAAFEHLAGD VDWHWAYEEK NVGESLYSAS GYEGVFVLED
DRTTYALFKG QPSQAGANTY IDAPLQPIID QARAAAIARE QVTHFVLFNG WPAVLSAAAV
RPDRDVTDSE VSQAPVMLFV DQLTEEKLAQ LGKGAGLTGM HVEKEDKQQH GHLRIDLGDT
GYHLSWSSPL PGHQLLWAVL PALLSVLLIL GLVMLYLCRH ALRSSRAVGL TLLHLQQSNQ
ALEASEQRFR AVAESASDWI WETDRQQRLT YLSQRFANVT GYPVDDWLGH PLNQLLACDT
TPLSPWLDVL TTADPQQLAN LRCTYRDPNG QNRYCRISAR AIWHDGKALG FRGTASDITD
EVDAHARIQH LSLHDPLTGL ANRNKLARHL EQALLRGNDS PPLTLLLLDL DNFKPINDSL
GHAAGDAVLQ EVATRLRDTT RDGDLVARLG GDEFILVLGG MDNRSEIDRF CARLIGLLQQ
PIIFDGQQLH IGASIGVAQT RTQGFDAGEL IRCADIALYQ AKADGKNTWR YFAAEMNQQI
QYRRQLENDL RRALRNQEFV LHYQPRYRLG DLRIVGVEAL LRWQHPQEGL LGPDTFIPLA
EQSDIIVALG RWVLREACRT AHDWPNDVLV SVNLSPAQFL RSDVVADVRE ILLDTAFPAQ
RLELEITENV MLNDIEGALG TMLSLKELGV RLNMDDFGTG YSSLGYLRTY PFDSIKIDKR
FISGLNNNGG SDRAVVQAII NLGEAMGLTV TAEGVESEQQ LKALEKDRCH EVQGYYMSRP
LDSAGLQALL QQTSKNTAQP L
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