Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PputGB1_4100 |
Symbol | |
ID | 5871900 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida GB-1 |
Kingdom | Bacteria |
Replicon accession | NC_010322 |
Strand | + |
Start bp | 4582583 |
End bp | 4583494 |
Gene Length | 912 bp |
Protein Length | 303 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 641549228 |
Product | LysR family transcriptional regulator |
Protein accession | YP_001670326 |
Protein GI | 167035095 |
COG category | [K] Transcription |
COG ID | [COG0583] Transcriptional regulator |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 29 |
Plasmid unclonability p-value | 0.733 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 45 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAACCTTC GCTTCCTCGA AACCTTCGTC TGGGTCGCCC GGCTCAAAAG CTTCCGCCTG ACGGCGCAAA AGCTGTTCAC CACCCAGGCC TCGGTGTCCA GCCGCATTGC CGCGCTGGAG GCCGACCTGG GCGTAAAACT GCTGCTGCGC GATTCCCGGG GCGTCAGCCT GACCCCAGAA GGTGGCAAGG TGCTGGAATA TGCCGAGCGC ATGCTGGAAA CCGCCAAGGC CATGAAGCAG TCGCTGGACA GCGACCGGGC CAAGGTCGGG CGAATTCGTA TTGGCGTGAT GGACACGGTA ATCCACACCT GGATGAGCGC GCTGGTGGCG GAACTGACCG AGCGCTACCC ACAGGTGGAA ATCGAGCTGG TGGCCGACAC CGCGCTGAAC CTGCGCGAGC AGTTGCAAAA GGGTTTTCTC GACGTGATTC TGCAGACCGA CTTGCTGCGC GAGCAGTCCA TCCGCAGCCT CGACCTGGCG CGCTACCCGA TGGGCTGGGT AGTGGCTGCC GGCTCGCACC AGCACCGGGA CTATGCCTCG CTGGCCGAGC TTGGTCGCGA GCGCATCATC ACCTTCTCGA AGAACTCACG GCCGCACCAA GAGGTGCTGA GTCTTCTGCA AGCTGCGGGC GCAGAAGCGC CGCGGTTGAA CTGCGTGAAC TCGGTGGCGG CGATCACCCG GCTGTTGCGC GACGGTTTTG GCATTGGCGC ATTGCCCCCA GCGCTGGTGG ATGCCGAGCT GGGCCGGGGT GAGTTGGTGC TGCTGGAGGG GCTGCAACCG CCGCCGAGCC TGGAGCTGGT GGTGGCGTGG CAGACCGGGG TGGCGTTGGT GGATGAGGTG GTTGGGGTTT GTCGACAGGT GCTGGAAGCG TATGCGCGGG ATGTGGGGGG GCAGCGGATA ATGCTCTTCT GA
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Protein sequence | MNLRFLETFV WVARLKSFRL TAQKLFTTQA SVSSRIAALE ADLGVKLLLR DSRGVSLTPE GGKVLEYAER MLETAKAMKQ SLDSDRAKVG RIRIGVMDTV IHTWMSALVA ELTERYPQVE IELVADTALN LREQLQKGFL DVILQTDLLR EQSIRSLDLA RYPMGWVVAA GSHQHRDYAS LAELGRERII TFSKNSRPHQ EVLSLLQAAG AEAPRLNCVN SVAAITRLLR DGFGIGALPP ALVDAELGRG ELVLLEGLQP PPSLELVVAW QTGVALVDEV VGVCRQVLEA YARDVGGQRI MLF
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