| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_4089 |
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| Symbol | |
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| ID | 5871889 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida GB-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010322 |
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| Strand | + |
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| Start bp | 4570161 |
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| End bp | 4571813 |
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| Gene Length | 1653 bp |
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| Protein Length | 550 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 641549217 |
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| Product | cyclic peptide transporter |
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| Protein accession | YP_001670315 |
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| Protein GI | 167035084 |
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| COG category | [P] Inorganic ion transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG4615] ABC-type siderophore export system, fused ATPase and permease components |
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| TIGRFAM ID | [TIGR01194] cyclic peptide transporter |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.0319097 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 44 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAACCT CCTCCCCCGG GGCCATCCGC GAACTGCTGG GCCTGCTCAA ACCTTACCGC
CCGGCGGTCA TCGTCTCGGT GCTGCTGGGC ATGGTCGGCG GCCTGGCCGT CACTGCGCTG
CTGGCCACCG TCAACCAGGG CCTGCACGCT GAAGGCGGCA TGAGCCAGGG TGTGATCCTG
GCCTTTGCCG GCCTCTGTGT ATTGGCCCTG GTCAGTAGCG TGGCGGCCGA CAGCGGCACC
AACTACGTCG GCCAGAAGGT CATTGCCCGG TTGCGCAAGG ACCTGGGCGC CAAGGTGCTG
TCGGCACCGA TCGAGCAGAT CGAGCGCTAC CGCACCCACC GCCTGATCCC CGTGCTGACC
CGCGACGTCG ACACCATCAG CGACTTTGCC TTCGCCTTTG CACCGCTGGC CATTTCGCTC
ACCACGGTAA CCGGTTGCAT GGCCTACCTG GCGTGGCTGT CGTGGCCGAT CTTCCTCATC
ACCCTGGCAG CCATCGGCAT CGGCAGCGGC ATCCAGTACG TGGCACGGCA AAAAGGCGTG
GCTGGCTTCA ACGCCGCCCG CGATGCCGAA GACAACCTGC AGAAGCACTA TTCGGCCATT
GCCGAAGGGG CCAAGGAGCT GCGCATCGAC CGCCGTCGCC GCCATGCCAT GCTGACGCGC
AACATCCAGG GCACCGCCGA CTTCATCGCC AACACTCACA TCCGCGCCAT CAACATCTTC
GTGGCGGCCA AGAGCCTGGG GTCGATGCTG TTCTTCGTGG TCATCGGCCT GACCTTGGCC
CTGCAATCGC TGTGGCCAAG CAATGACCCG GCGGTGATGA GCGGTTTCGT GCTGGTGCTG
CTGTACATGA AAGGCCCGCT GGAAACGCTG ATCGGCAACC TGCCGATCCT CGGCCGCGCC
CAGGTGGCGT TCCGCCGTAT AGCCGACCTG TCCGAACGCT TCTCCTCGCC CGAACCGCAC
CTGCTGCTGG AGCCGCCGGT CAAGCGCGAA ACCCCGGCTA CCGCGCACCT GGAGCTGCAC
AACGTCGAAT ACGCGTACCC ACCCGTGGAC GGCAACGAGC CGTTTCGCGT TGGGCCTGTG
AACCTGAGCA TCGAACCGGG CGAAATCCTG TTCATCGTCG GGGAAAACGG CTGCGGCAAG
ACTTCGCTGA TCAAGCTGCT ACTGGGCCTG TACGCCCCAC AACGCGGTGA AGTGCGCCTG
AACGGCAAGG CCGTCGGCCC GGAGGCGCTG GACGACTATC GCCAGCTGTT CACCACCGTG
TTCGCCGATT ACTATCTGTT CGAAGACCTG CCCGAGCACG AGCACAGCCT GCCCAGCGAT
GCCACGCGTT ACCTGGAACG GCTGGAAATT GCCCACAAGG TCAGCGTACG CGATGGCGCC
TTCACCACCA CCGACTTGTC GACCGGGCAG CGCAAGCGCC TGGCGCTGGT CAATGCCTGG
CTGGATGGGC GGCCGGTACT GGTGTTCGAT GAGTGGGCGG CGGACCAGGA CCCAACCTTC
CGCCGGGTGT TCTACACCGA GCTGTTGCCG GACCTGAAGC GTTTGGGCAA GACCATCATC
GTGATCTCGC ATGATGACCG GTACTTCGAT ACGGCGGACA AGGTGGTGCA CCTGAGCCGT
GGGAAGGTGG TCGAGGCATT GGAGCCGGCT TGA
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| Protein sequence | MKTSSPGAIR ELLGLLKPYR PAVIVSVLLG MVGGLAVTAL LATVNQGLHA EGGMSQGVIL
AFAGLCVLAL VSSVAADSGT NYVGQKVIAR LRKDLGAKVL SAPIEQIERY RTHRLIPVLT
RDVDTISDFA FAFAPLAISL TTVTGCMAYL AWLSWPIFLI TLAAIGIGSG IQYVARQKGV
AGFNAARDAE DNLQKHYSAI AEGAKELRID RRRRHAMLTR NIQGTADFIA NTHIRAINIF
VAAKSLGSML FFVVIGLTLA LQSLWPSNDP AVMSGFVLVL LYMKGPLETL IGNLPILGRA
QVAFRRIADL SERFSSPEPH LLLEPPVKRE TPATAHLELH NVEYAYPPVD GNEPFRVGPV
NLSIEPGEIL FIVGENGCGK TSLIKLLLGL YAPQRGEVRL NGKAVGPEAL DDYRQLFTTV
FADYYLFEDL PEHEHSLPSD ATRYLERLEI AHKVSVRDGA FTTTDLSTGQ RKRLALVNAW
LDGRPVLVFD EWAADQDPTF RRVFYTELLP DLKRLGKTII VISHDDRYFD TADKVVHLSR
GKVVEALEPA
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