| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_4084 |
|---|
| Symbol | |
|---|
| ID | 5871884 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida GB-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010322 |
|---|
| Strand | - |
|---|
| Start bp | 4550690 |
|---|
| End bp | 4554034 |
|---|
| Gene Length | 3345 bp |
|---|
| Protein Length | 1114 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 641549212 |
|---|
| Product | amino acid adenylation domain-containing protein |
|---|
| Protein accession | YP_001670310 |
|---|
| Protein GI | 167035079 |
|---|
| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG1020] Non-ribosomal peptide synthetase modules and related proteins |
|---|
| TIGRFAM ID | [TIGR01733] amino acid adenylation domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.85613 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 39 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCACCG ATACCCGCAA CACCGACCTG GTTCACCGCT TCATTCGGCT GCCACTCGAG
CAGCGCAGGC TGTTTCTGGA AAAGCTGGCC TCCAAGGGCA GCAGCCTGGC GCAGTTGCCC
ATCCCGCAGG TGCGTGGGGA ATTTGCGCAA CTGCCGCTTT CCTTCGCCCA GCAGCGACAG
TGGTTCCTGT GGAAGCTCGA CCCGAACAGC GCGGTGTACA ACATCTCTTC GGCCTTGCGC
TTCAAGGGCG AGCTGGACCG GGCCGCTCTG CAGCGTGCCT TCGACACGTT GCTGGTCCGG
CATGAAGCGC TGCGTACAAC CTTCAGCCAA CAGGGCGAGA AGGTGGTACA AGTGGTTCAC
CCGAGCCTGC CATTGACCGT GGCCTACGAG CACTTGAACG GTGCCGGCGA ACATGCCCTG
CGCGAGCAGG TGGAGCGTGA GGCCCGTCAA ACCTTCGACC TGGAAAACGG CCCATTGCTG
CGGGTGAAAC TGCTGCAATT GAATGCTCAA GAGCATGTGC TGGTGCTGGT GCTGCACCAC
ATCATTGCTG ACGGCTGGTC CATGCCAGTG ATGGTGGAAG AGTTGGTGCG CCTGTATGCA
GCATACAACC AGGAGGGCGA CGTGCAGTTG CCTACCCTGC CGATCCAGTA CGCCGACTAT
GCTATCTGGC AACGCAGCTG GATGGAGGCC GGTGAGCAGG AGCGGCAGCT GGCTTACTGG
ACCGCCCAAC TGGGGGGCGA GGACCCCGTG CTGGAATTGC CGACGGACCG CCCGCGACCT
ACGGTCAGCA GCCTTAAGGG CGAGCGGCTG GCGATCGACC TGCACGAGCA GCAAGCACAT
GCACTCAAAC AGTTCGCCCA GCAACAGGGC GTGACGCCAT TCATGGTGCT GCTGGCCAGC
TTCCAGACCC TGTTGCACCG TTATTCGGGG CAATCTGATA TCCGCGTCGG AGTGCCGGTG
GCCAACCGCA ACCGTGTGGA AACCGAGCGC CTGGTGGGGT TGTTCGTCAA CACCCAGGTG
CTGCGCGCCG AGTTCGATGT GCAGATGTCT TTCAGCGAGT TCCTCGGCCA GGTCAAACAG
CGGGTCGTCG AGGCCCAGGC TCACCAAGAC CTGCCGTTCG AACAGCTGGT AGAGGCCCTG
CAGCCAGAGC GTAGCCTTAA CCACAGCCCG CTGTTCCAGG TGATGTACAA CCATCAGACC
CAGGCCCGGG GCGAGCAGCA CAGCTTGCCG GGGCTGGAAG TGCAAGCCGT GGCGTGGGAC
AACCATACCG CCAAGTTCGA CCTGACCCTG GAAACCTACG AGCATGACAA GGGTATCGGC
GCGGCGCTGA TCTACGCCAC CGACCTGTTC GATGCTTCGA CTGCTCGCAC GTTCGCCCGG
CATTGGCAGA ATCTGCTGAC GGTCATCATT GAACAGCCTG CTCAGCGCAT CGCCGACCTT
GCCCTGCTGG ACGATCATGA GTATCAGCAG ATCGTCGAAG GCTGGAACGC GACCCTGGCC
AGCTACCCTG ATGACAGCTG TATTCACCAG CTGTTCGAAG CACAAGTGAC GAAAGCCCCA
GATGCGCCAG CGCTGATTTT TGGCGAGCAG ACGCTGAGCT ATGGCGAACT CAATCGCCGG
GCCAATCAAC TGGCGCACAA GCTGCGCGAG CAGGGTGTCG GCCCGGATGT GCTGGTGGGC
ATTGCCATAC AGCGCAGCCT GGAGATGGTC GTGGGCTTGC TGGCTATCCT CAAGGCGGGT
GGCGCCTACG TGCCGCTGGA CCCGGAATAC CCGCAGGACC GTCTGGAATA CATGCTCGAT
GACAGCCAGG CGATCCTGCT TTTGTCAGAG ACCAGCCTGA TCACGCGCAT GCCTGCGCAG
TTCCAGTCGC GTACGCTGCT GCTCGATCAG TTGACGCTCG ACGGCTACCC GGATACTGAC
CTGGCCTGTT TGCCCACCGC CCGCAACCTC ATCTATTGCA TCTACACATC AGGCTCCACC
GGCAAGCCCA AGGGGGTGCA AATCGAGCAC CGCAGCGTGG CGGCCCTGAT CGGCTGGTCG
CTGTCGGTAT ACAGCCAGGC GGACCTGTGC GGTGTGCTTT TCTCCACCTC GATCTGCTTC
GACCTGTCGG TATGGGAGCT GTTCGTCACC TTGTCGGCTG GTGGCTATGC GGTGTTGGCT
GCCAACGCCC TTGAACTGCC TGACCTGGCG GCCAGGGACC GGGTGCGGCT GGTGAATACC
GTGCCGTCGG CCATCAAGCA GCTGTGCGAA ACCGGCAACA TTCCGCCGTC GGTAAAAATC
ATCAACCTTT GCGGCGAAGC GCTAAAGCAG TCGATCGTCG ACGATTTGTA CCGCTTGGAG
CATGTGAGCG ATGTGTACGA CCTTTACGGC CCGTCCGAGG ACACTACCTA CTCTACCTGC
ACGCTCAGGG CCGCTGGCGG CAAGGCCAAT ATCGGCCGGC CGTTGGACAA CAGTGCAGCC
TATGTGCTGA GCGGCGGCTT GCAACCTGTG CCGGTGGGGG CGGTAGGCGA ATTGTACCTG
GCCGGTGCCG GGTTGGCCCG TGGTTACCTG AAACGCCCGG GGCTCAGTGC TGAGCGGTTC
TTGCCCAACC CTTTCGATGA GCAGGGCGGG CGTATCTACC GTACCGGTGA CCTTGCCCGC
TATCGCCCCG ACGGTGTGCT GGAGTACGTC GGCCGGGTGG ATCATCAGGT GAAGGTCCGC
GGCTTTCGGA TCGAACTGGG TGAGATCGAA ACCCGCCTGC AGCAAGAGGC GGTGCGCGAA
ACCGTGGTCA TGGCCATCGA CGGGCCGGCG GGGCAACACC TGGTGGCCTA TGTCGTGCCT
ACCGATGCCC GCGTGATGGC CGATGTGGCC GCACAGGAGA CGCTGCGTGA AAACCTGCGG
GCTGCGCTGC GCAAGAGCTT GCCGGAGTAC ATGGTGCCCT CCCACCTGGT GCTGATGGAC
AGACTGCCAC TCACGCCCAA CGGCAAGCTG GACCGCAAGG CGCTGCCGCG CCCGGACACT
GCCCAGCTCT CAGAGGCCCA TGTGCCGCCG CGTACGCCGC TGCAGCAGCA GGTGGCCGCT
ATCTGGGCCG ATGTACTGAA AATCGAACGG GTTGGCCTGA ACGACAATTT CTTCTTCCTT
GGCGGGCACT CGCTGATCGC CACCCAGGTG ACCGGTCGCG TCCAGGAGCA GGCGGGGTTG
GCGGTCAGCC TGAAGGCACT GTTCGAAAAC CCTGTGCTTG GCGACTACTG CACGCAGTTG
GAGCAACTGG CACCGCTGGC GGACCCCGTT CAGAACGAAC TGGCTAAATC CCTGGAGGCC
TTGAAACGTC TATCTACGGA GGAAATTGAA AAGCTGCTTT CTTAG
|
|---|
| Protein sequence | MSTDTRNTDL VHRFIRLPLE QRRLFLEKLA SKGSSLAQLP IPQVRGEFAQ LPLSFAQQRQ
WFLWKLDPNS AVYNISSALR FKGELDRAAL QRAFDTLLVR HEALRTTFSQ QGEKVVQVVH
PSLPLTVAYE HLNGAGEHAL REQVEREARQ TFDLENGPLL RVKLLQLNAQ EHVLVLVLHH
IIADGWSMPV MVEELVRLYA AYNQEGDVQL PTLPIQYADY AIWQRSWMEA GEQERQLAYW
TAQLGGEDPV LELPTDRPRP TVSSLKGERL AIDLHEQQAH ALKQFAQQQG VTPFMVLLAS
FQTLLHRYSG QSDIRVGVPV ANRNRVETER LVGLFVNTQV LRAEFDVQMS FSEFLGQVKQ
RVVEAQAHQD LPFEQLVEAL QPERSLNHSP LFQVMYNHQT QARGEQHSLP GLEVQAVAWD
NHTAKFDLTL ETYEHDKGIG AALIYATDLF DASTARTFAR HWQNLLTVII EQPAQRIADL
ALLDDHEYQQ IVEGWNATLA SYPDDSCIHQ LFEAQVTKAP DAPALIFGEQ TLSYGELNRR
ANQLAHKLRE QGVGPDVLVG IAIQRSLEMV VGLLAILKAG GAYVPLDPEY PQDRLEYMLD
DSQAILLLSE TSLITRMPAQ FQSRTLLLDQ LTLDGYPDTD LACLPTARNL IYCIYTSGST
GKPKGVQIEH RSVAALIGWS LSVYSQADLC GVLFSTSICF DLSVWELFVT LSAGGYAVLA
ANALELPDLA ARDRVRLVNT VPSAIKQLCE TGNIPPSVKI INLCGEALKQ SIVDDLYRLE
HVSDVYDLYG PSEDTTYSTC TLRAAGGKAN IGRPLDNSAA YVLSGGLQPV PVGAVGELYL
AGAGLARGYL KRPGLSAERF LPNPFDEQGG RIYRTGDLAR YRPDGVLEYV GRVDHQVKVR
GFRIELGEIE TRLQQEAVRE TVVMAIDGPA GQHLVAYVVP TDARVMADVA AQETLRENLR
AALRKSLPEY MVPSHLVLMD RLPLTPNGKL DRKALPRPDT AQLSEAHVPP RTPLQQQVAA
IWADVLKIER VGLNDNFFFL GGHSLIATQV TGRVQEQAGL AVSLKALFEN PVLGDYCTQL
EQLAPLADPV QNELAKSLEA LKRLSTEEIE KLLS
|
|---|
| |