| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_4048 |
|---|
| Symbol | |
|---|
| ID | 5871848 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida GB-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010322 |
|---|
| Strand | + |
|---|
| Start bp | 4497146 |
|---|
| End bp | 4497703 |
|---|
| Gene Length | 558 bp |
|---|
| Protein Length | 185 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 641549176 |
|---|
| Product | peptidyl-prolyl cis-trans isomerase cyclophilin type |
|---|
| Protein accession | YP_001670274 |
|---|
| Protein GI | 167035043 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0652] Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 39 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 42 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTGAAAA AACTCCTGCT CACCGCCTGT TCGGTCGCCT TCGCCACCAG CGTCATGGCC
TCTGACAAGA CCCCGCACGT TCTGCTGGAC ACCAGCTTCG GCCAGGTCGA AATCGAGCTG
AACGCCGAGA AGGCACCGGT CAGCACGAAG AATTTCCTGC AATACGTCGA CAGCGGTTTC
TACAACAACA CGATTTTCCA CCGGGTGATC CCGGGCTTCA TGGTGCAGGG CGGCGGCTTC
ACTGACCAGA TGGTGCAGAA GAACACCAAC GACCCGATCA AGAACGAAGC CAGCAATGGC
CTGCTGAACA CCCGTGGCAC CCTGTCGATG GCGCGCACCT CGGACCCGAA CTCCGCCACC
AGCCAGTTCT TCATCAACGT GGCCGACAAC GATTTCCTCA ACCCAGGGCG TGACCGTGGC
TACGCCGTAT TCGGCAAGGT GACCAAGGGC ATGGAAGTGG TCGACCAGAT CGTCAATTCG
CCGACCACCA TCAAGAAAGG CATGCGCGAT GTACCGGCGG ACCCGGTGTA CATCAAGTCG
GCCAAACGCA TCGACTGA
|
|---|
| Protein sequence | MLKKLLLTAC SVAFATSVMA SDKTPHVLLD TSFGQVEIEL NAEKAPVSTK NFLQYVDSGF
YNNTIFHRVI PGFMVQGGGF TDQMVQKNTN DPIKNEASNG LLNTRGTLSM ARTSDPNSAT
SQFFINVADN DFLNPGRDRG YAVFGKVTKG MEVVDQIVNS PTTIKKGMRD VPADPVYIKS
AKRID
|
|---|
| |