| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_4013 |
|---|
| Symbol | |
|---|
| ID | 5871813 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida GB-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010322 |
|---|
| Strand | + |
|---|
| Start bp | 4463917 |
|---|
| End bp | 4465371 |
|---|
| Gene Length | 1455 bp |
|---|
| Protein Length | 484 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 641549141 |
|---|
| Product | cation transporter |
|---|
| Protein accession | YP_001670239 |
|---|
| Protein GI | 167035008 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG0168] Trk-type K+ transport systems, membrane components |
|---|
| TIGRFAM ID | [TIGR00933] potassium uptake protein, TrkH family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 0.398378 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.000106015 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGGCGTTGC CGACCTTAAG GATCATTGGT TTCATCATCG GCATCTTCCT GATTACCCTG
GCCGTGGGCA TGGCCGTGCC CATGGCTACC CTGGTGATCT TCGAGCGTAC CGGTGACATG
CCGTCGTTCC TCTGGTCGAG CCTGATCACC TTCATCGCAG GCCTTGCCCT GGTAATACCG
GGGCGCCCGG AGCATGTACA CCTGCGCCCG CGCGACATGT ACCTGCTGAC GGTCAGCAGT
TGGCTGGTGG TGTGCGTGTT CGCCGCGCTG CCGTTCCTGC TGACTCAGCA CATCAGTTAC
ACCGACGCCT TCTTCGAAAG CATGTCAGGC ATTACCGCCA CAGGCGCCAC CGTGCTCAGC
GGGCTCGATA GCATGTCACC GGGTATCCTG ATGTGGCGCT CGATGCTGCA CTGGCTCGGC
GGTATCGGCT TCATCGCCAT GGCGGTGGCA ATCCTGCCAC TGCTGCGTAT CGGTGGCATG
CGCCTGTTCC AGACCGAATC GTCCGACCGC TCGGAAAAGG TCATGCCGCG CTCGCACATG
GTCGCCAAAT CGATCGTGGG GGTTTACGTC GGTTTCTCCA TCCTGGGTTC GCTGGCCTTC
TGGTGGGCGG GCATGAGCCC GTTCGATGCG ATCAACCATG CCATGTCGGC GATCTCCACC
GGCGGTTTCT CCACCTCCGA CCAATCCTTG GCGAAATGGG ATATCCCCGC CGTGCACTGG
GTTGCGGTGG TGGTGATGAT CATGGGCAGC CTGCCGTTCA CCCTTTACGT GGCCACCCTG
CGCGGCAACC GCAAGGCGCT GATCCGCGAC CAGCAGGTGC AAGGGTTGCT GGGCATGTTG
GTGGTCACCT GGCTGGTGTT GGGCACCTGG TACTGGTACA GCACCAACCT GCACTGGCTC
GACGCCCTGC GCCACGTCGC ACTGAACGTG ACCTCGGTGG TCACCACCAC CGGTTTCGCC
CTGGGTGACT ACAGCCTGTG GGGCAATTTT TCGCTGATGC TGTTCTTCTA CCTGGGCTTC
GTTGGCGGCT GCTCCGGCTC GACCGCGGGC GGCATCAAGA TTTTCCGCTT CCAGGTGGCC
TATATCCTGC TCAAGGCCAG CCTCAACCAG CTGATTCACC CGCGTGCGGT GATCAAGCAG
AAATACAACG GCCATCGCCT CGACGAAGAC ATCGTGCGTT CGATCCTGAC GTTCTCGTTC
TTCTTCGCCA TCACCATCTG CGTCATGGCC TTGCTGCTGT CGTTGCTGGG CGTGGACTGG
ATGACTGCAC TGACCGGCGC CGCTGGCACG GTTTCGGGTG TGGGGCCGGG CCTGGGTGAA
GTGATCGGCC CTTCGGGTAA CTACGCCACG CTGCCTGACG CGGCCAAGTG GATCTTGGCG
GCCGGCATGC TGCTTGGCCG CCTGGAAATC ATCACGGTAC TAGTGTTGTG CATGCCGGCG
TTCTGGCGTC ATTGA
|
|---|
| Protein sequence | MALPTLRIIG FIIGIFLITL AVGMAVPMAT LVIFERTGDM PSFLWSSLIT FIAGLALVIP
GRPEHVHLRP RDMYLLTVSS WLVVCVFAAL PFLLTQHISY TDAFFESMSG ITATGATVLS
GLDSMSPGIL MWRSMLHWLG GIGFIAMAVA ILPLLRIGGM RLFQTESSDR SEKVMPRSHM
VAKSIVGVYV GFSILGSLAF WWAGMSPFDA INHAMSAIST GGFSTSDQSL AKWDIPAVHW
VAVVVMIMGS LPFTLYVATL RGNRKALIRD QQVQGLLGML VVTWLVLGTW YWYSTNLHWL
DALRHVALNV TSVVTTTGFA LGDYSLWGNF SLMLFFYLGF VGGCSGSTAG GIKIFRFQVA
YILLKASLNQ LIHPRAVIKQ KYNGHRLDED IVRSILTFSF FFAITICVMA LLLSLLGVDW
MTALTGAAGT VSGVGPGLGE VIGPSGNYAT LPDAAKWILA AGMLLGRLEI ITVLVLCMPA
FWRH
|
|---|
| |