Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PputGB1_4003 |
Symbol | |
ID | 5871803 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida GB-1 |
Kingdom | Bacteria |
Replicon accession | NC_010322 |
Strand | - |
Start bp | 4456361 |
End bp | 4457131 |
Gene Length | 771 bp |
Protein Length | 256 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 641549131 |
Product | segregation and condensation protein B |
Protein accession | YP_001670229 |
Protein GI | 167034998 |
COG category | [K] Transcription |
COG ID | [COG1386] Predicted transcriptional regulator containing the HTH domain |
TIGRFAM ID | [TIGR00281] segregation and condensation protein B |
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Plasmid Coverage information |
Num covering plasmid clones | 29 |
Plasmid unclonability p-value | 0.577747 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 10 |
Fosmid unclonability p-value | 0.000000530322 |
Fosmid Hitchhiker | No |
Fosmid clonability | decreased coverage |
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Sequence |
Gene sequence | ATGAATTTGA ATGACCCCCG CGACCTGGCG TCGCTGATCG AAGCTTTTTT GCTGGCATCG GGCAAGCCGC AATCCCTGGA GCGCCTGTAC GAGCTGCTCG ATGAGGCCGA GCGCCCCGAG CCGCACGTGT TCAAGCAGGC CCTGGAGGTA CTGGGCAAGT CGTGCAGCGG CCGTGCCTTC GAGCTCAAGG AAGTGGCCAG CGGTTACCGC CTGCAGATCC GCGAGGACTA TGCGCCCTGG GTCGGGCGCC TGTGGGAAGA ACGCCCGCAA CGCTATTCGC GTGCGTTGCT CGAAACCTTG GCCTTGATCG CCTACCGCCA ACCGATCACC CGTGGCGAGA TTGAAGACGT GCGGGGTGTT GCAGTGAACA GCAACATCAT CAAGACCATG ATGGAGCGCG AGTGGATCCG CGTGGTGGGC TATCGGGAAG TACCGGGTCG GCCGGCGATG TTCGCCACCA CCAAGGCGTT TCTCGACCAT TTCAACCTCA AGAGCCTAGA GGAGCTGCCG GCTTTGGCCG AGTTGCGCGA AATGGAGCCC GAGCCGCTGC TCGACCCGGA CGATGCGCCA GTGCCGGCGC ACTTGCAGGC GTTGGCGGAT GCCAGCCTGG GCGAGGAGGA AGAGGCTGGC GAGCCGAAGG AAGAGACCAG CTTCCGTAGC CTGTTGGTGG AGCTGGATGC CATGGAAGAG GGGCTGAAGA CCGATTTTGA TGACTTGCGC GAGGATGAGC CTGAGGCTTC CGCGGAAGAA GAGGGCAAGT TGCAGCCCTG A
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Protein sequence | MNLNDPRDLA SLIEAFLLAS GKPQSLERLY ELLDEAERPE PHVFKQALEV LGKSCSGRAF ELKEVASGYR LQIREDYAPW VGRLWEERPQ RYSRALLETL ALIAYRQPIT RGEIEDVRGV AVNSNIIKTM MEREWIRVVG YREVPGRPAM FATTKAFLDH FNLKSLEELP ALAELREMEP EPLLDPDDAP VPAHLQALAD ASLGEEEEAG EPKEETSFRS LLVELDAMEE GLKTDFDDLR EDEPEASAEE EGKLQP
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