Gene PputGB1_3924 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPputGB1_3924 
Symbol 
ID5871718 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida GB-1 
KingdomBacteria 
Replicon accessionNC_010322 
Strand
Start bp4367710 
End bp4369401 
Gene Length1692 bp 
Protein Length563 aa 
Translation table11 
GC content64% 
IMG OID641549046 
Productresponse regulator receiver protein 
Protein accessionYP_001670150 
Protein GI167034919 
COG category[K] Transcription
[T] Signal transduction mechanisms 
COG ID[COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
[COG2208] Serine phosphatase RsbU, regulator of sigma subunit 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones26 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones55 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCGGCCG AACAGGCGTT GACCGTGCTG GTCGCCGAGG ACGGGGCCGC CGACCGCCTG 
TTGTTGGCGC AGATCGTGCG CCGTCAGGGC CACCAGGTCG TCACCGCGGA AAACGGCGAG
CAGGCGGTAG CGCTGTTCAT CGAGCGGCGC CCGCAGTTGG TGCTGCTCGA TGCGCTGATG
CCGGTGATGG ACGGCTTCGA GGCGGCGCGG CAAATCAAGG CCCTGGCGGG CGAAGCGCTG
GTGCCGATCA TTTTCCTGAC CTCGCTGAAC GAGGAGGAAG GCCTGGTGCG CTGCCTGGAA
GCGGGTGGCG ATGACTTCAT GGCCAAACCC TACAGCGCGG TGATCCTCGC CGCCAAGATA
CGCGCCATGG ACCGCCTGCG CCGGTTGCAG GCCACTGTGC TGGAGCAGCG CGACCAGATT
ACCCGGCACC ATCACCACCT GCTGAACGAG CAGCGGGTGG CCAAGGCAGT GTTCGACAAG
GTAGCCCACT CCGGCTGCCT TGGCGCGCCC AACATCCGCT ACCTGCAATC GCCCTACGCG
CTGTTCAATG GCGACCTGAT GCTGGCAGCG TTTACCCCGG CCGGCGATAT GCGCGTACTG
CTCGGCGATT TCACTGGGCA TGGCTTGCCG GCGGCGGTCG GCGCCATGCC ACTGGCCGAG
GTGTTCTACG GCATGACCGC CAAGGGCTAC GGTATGGCGC AGATCCTGCG CGAGATGAAC
GCCAAGCTCA AACGTATCCT GCCAGTGGAC ATGTTCTGCT GCGCGCTACT GCTCAACCTC
AGTATGCAGC GCGGTTCGGT GGAGGTTTGG AATGGCGGCA TGCCTGATGG TTATCGCCTG
TCGGTGGATG GCCAGGTGCT GTCGGTGCTG AATTCACGGC ACCTGCCGCT GGGCATTCTC
GCTGCCGAGC GCTTCGATGA CAGCACTGAA GTGTTGCCGC TGGCGCCGGG CGAGCGCCTG
TTGCTGCTGT CGGACGGCGT ACTCGATACC GCCGACGACC AGGACCGCTT GTTTGGCGTG
CAGCGCCTAC GTCAGGTGCT GGCCGACAAC CGCGACCCAG CGCAGTTGTT CGATGAACTG
ATGCAGGCCC TGGAGCGCTT TGGTGGGCGC CCACGCGATG ACATCAGCTT GTGCGATATT
CGCATGTTCA CCGCCGAGGA GCGGGTGCCG GCGCCGATGA TCTACTCTGA TAGCGGCCGC
TCCAGCCCGC TGGACTGGTC GCTGGGCTTC GAGGTGCGTG GCGAGAGCCT GAAACGCTTC
AATCCGGTGC CGTATCTGGT GCAGTTGTTG CAGGAAATTC ACGGCCTGCG CGCGCGCACC
GGCAGCCTGC ACAGTGTGCT CAGCGAGTTG TATTCCAATG CATTGGAGCA TGGTGTGCTG
GGCCTGGATT CTCAGCTCAA GCGCGATGTG CAGGGCTTTG CCGACTATTA TCAGGAGCGC
GCGCGGCGCC TGGGGTCGTT GACAGGCGGC TTTGTAAGCA TCGATTTCAA GGTTGAACCC
CATGGCGACG GTGGCCGTCT GAAGATTCAG GTGCGCGACA GCGGTGCCGG CTTCGACGTG
CAGCGGGTAC TTGCGCGGCC CTCGCGGGAT CAGGGGCTTA GCGGCCGTGG TCTGAACCTG
GTTCGGCGGT TGGCCAGTGA CGCGCGCTGG AGTGATGGCG GGCGTTGCGC GCAAGTGGAG
TTCGTATGGT GA
 
Protein sequence
MPAEQALTVL VAEDGAADRL LLAQIVRRQG HQVVTAENGE QAVALFIERR PQLVLLDALM 
PVMDGFEAAR QIKALAGEAL VPIIFLTSLN EEEGLVRCLE AGGDDFMAKP YSAVILAAKI
RAMDRLRRLQ ATVLEQRDQI TRHHHHLLNE QRVAKAVFDK VAHSGCLGAP NIRYLQSPYA
LFNGDLMLAA FTPAGDMRVL LGDFTGHGLP AAVGAMPLAE VFYGMTAKGY GMAQILREMN
AKLKRILPVD MFCCALLLNL SMQRGSVEVW NGGMPDGYRL SVDGQVLSVL NSRHLPLGIL
AAERFDDSTE VLPLAPGERL LLLSDGVLDT ADDQDRLFGV QRLRQVLADN RDPAQLFDEL
MQALERFGGR PRDDISLCDI RMFTAEERVP APMIYSDSGR SSPLDWSLGF EVRGESLKRF
NPVPYLVQLL QEIHGLRART GSLHSVLSEL YSNALEHGVL GLDSQLKRDV QGFADYYQER
ARRLGSLTGG FVSIDFKVEP HGDGGRLKIQ VRDSGAGFDV QRVLARPSRD QGLSGRGLNL
VRRLASDARW SDGGRCAQVE FVW