| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_3891 |
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| Symbol | |
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| ID | 5871685 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida GB-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010322 |
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| Strand | - |
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| Start bp | 4336480 |
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| End bp | 4338468 |
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| Gene Length | 1989 bp |
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| Protein Length | 662 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 641549013 |
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| Product | cytochrome c-type biogenesis protein CcmF |
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| Protein accession | YP_001670117 |
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| Protein GI | 167034886 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG1138] Cytochrome c biogenesis factor |
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| TIGRFAM ID | [TIGR00353] c-type cytochrome biogenesis protein CcmF |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.0198863 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 44 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACGCCG CGTTGGTGAT CCCCGAACTG GGCCAGTTGG CGATGATCCT GGCCATTTGC
TTTGCCGCTG TGCAGGCCAG TGTGCCGCTG CTCGGTGCCT GGCGTGGCGA CAGCCTATGG
ATGAGCCTGG CACGGCCGGC GGCGTGGGGG CAGTTTGCCT TCCTGGCGTT CGCCTTCGCC
TGCCTGACCC ATGCCTTCAT GACCGATAAC TTCTCGGTCG CCTATGTAGC CAGCAACTCC
AACAGCGCCT TGCCCTGGTA CTACAAGTTC AGCGCGGTGT GGGGTGCCCA CGAAGGCTCG
TTGCTGTTGT GGGCATTGAT CCTCGGCGGC TGGACCTTTG CCGTGTCGGT GTTTTCGCGG
CAGTTGCCGC AGGTGATGCT GGCCCGCGTG CTGGCGGTCA TGGGCATGAT CAGCGTGGGC
TTCCTGAGCT TCCTGATCAT TACCTCCAAC CCGTTCCAGC GCCTGCTGCC GCAGGTGCCG
ACCGATGGCC GTGACCTCAA CCCGCTGTTG CAGGACTTTG GCCTGATCGT TCACCCGCCG
ATGCTGTACA TGGGCTACGT GGGCTTTTCG GTGGCCTTCG CCTTCGCCAT TGCCGCCTTG
CTCGGCGGCC GCCTCGACGC CGCCTGGGCG CGCTGGTCGC GGCCGTGGAC CATCGTCGCC
TGGGCCTTCC TTGGCGTGGG TATCACCCTG GGCTCGTGGT GGGCCTACTA CGAGCTGGGC
TGGGGCGGCT GGTGGTTCTG GGACCCGGTG GAAAACGCCT CGTTCATGCC TTGGCTGGTG
GGTACGGCGC TGATCCACTC GCTTGCAGTG ACCGAAAAGC GCGGGGTGTT CAAGAGCTGG
ACCGTGCTGC TGGCAATTGC CGCATTCTCG CTGAGCCTGT TGGGTACCTT CCTGGTGCGC
TCGGGCGTGC TGACCTCGGT GCACGCATTT GCCGCCGACC CGTCGCGGGG CATTTTCATC
CTGATTTTCC TGCTGTTCGT GGTCGGTGGT TCGCTCACCC TGTTCGCCCT GCGCGCACCG
GTGGTCAAGA GCCAGGTCGG GTTCGCCCTG TGGTCGCGGG AAACGCTGCT GTTGGCCAAC
AACCTGGTAC TGGTGGTGGC GGCTTCGATG ATTCTGCTCG GCACCCTGTA CCCGCTGGTA
CTCGATGCGT TGACGGGGGC CAAGCTGTCG GTCGGCCCGC CGTACTTCGA TGCCTTGTTC
CTGCCGCTGA TGGCGCTGCT GATGGTAGTG CTGAGCATTG GCGTGGTCGT GCGCTGGAAG
GACACCCCGG GCAAATGGCT GGTCAGCATG ATGACCCCGG TGCTGATCGG CAGCGCCATC
CTTGCCCCGG TTGCCGGCTT CATCGTCGAC GACTTCGACT GGCCGACCCT GACGGCCTTC
GCCCTGGCTG CCTGGGTGGT GCTCGGCGGG CTGCGTGACA TTCTCGACAA GACCCGCCAC
AAGGGCCTGG TCAAGGGGCT GCCCGGCCTG GGCCGCAGCT ACTGGGGCAT GCAACTGGCG
CACCTGGGCC TGGCGGTGTG CGCGCTGGGC GTGGTGCTGT CGAGCAACAA CAGCGCCGAA
CGCGACCTGC GCATGGCGCC GGGCGAAAGC GTGGAGCTGG GTGGTTACCA CTTCCTGTTC
CAGGGCGCCA AGCACTTCGA AGGGCCGAAC TTCATCTCTG ACAAGGGCAC CATCGTGGTC
AGCCGCAATG GCCGTGAGGT GACCACCTTG CACCCAGAGA AGCGCCTGTA CACCGTGCAG
CAGTCGATGA TGACCGAAGC AGGCATCGAC GCTGGCTTTA CCCGCGACCT GTACGTCGCC
CTTGGCGAGC CGCTGGAGAA CGGCGCCTGG GCCGTGCGTG TGCATATCAA GCCTTATGTC
CGCTGGATCT GGCTGGGCGG TCTGTTGACC GGCCTGGGCG GGTTGCTGGC GGCCCTCGAC
CGGCGCTACC GCGTCAAGGT CAAGACCCGG GTACGCGATG CCCTGGGCGT GTCTGGAGCA
GCTGCATGA
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| Protein sequence | MNAALVIPEL GQLAMILAIC FAAVQASVPL LGAWRGDSLW MSLARPAAWG QFAFLAFAFA
CLTHAFMTDN FSVAYVASNS NSALPWYYKF SAVWGAHEGS LLLWALILGG WTFAVSVFSR
QLPQVMLARV LAVMGMISVG FLSFLIITSN PFQRLLPQVP TDGRDLNPLL QDFGLIVHPP
MLYMGYVGFS VAFAFAIAAL LGGRLDAAWA RWSRPWTIVA WAFLGVGITL GSWWAYYELG
WGGWWFWDPV ENASFMPWLV GTALIHSLAV TEKRGVFKSW TVLLAIAAFS LSLLGTFLVR
SGVLTSVHAF AADPSRGIFI LIFLLFVVGG SLTLFALRAP VVKSQVGFAL WSRETLLLAN
NLVLVVAASM ILLGTLYPLV LDALTGAKLS VGPPYFDALF LPLMALLMVV LSIGVVVRWK
DTPGKWLVSM MTPVLIGSAI LAPVAGFIVD DFDWPTLTAF ALAAWVVLGG LRDILDKTRH
KGLVKGLPGL GRSYWGMQLA HLGLAVCALG VVLSSNNSAE RDLRMAPGES VELGGYHFLF
QGAKHFEGPN FISDKGTIVV SRNGREVTTL HPEKRLYTVQ QSMMTEAGID AGFTRDLYVA
LGEPLENGAW AVRVHIKPYV RWIWLGGLLT GLGGLLAALD RRYRVKVKTR VRDALGVSGA
AA
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