| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_3881 |
|---|
| Symbol | |
|---|
| ID | 5871675 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida GB-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010322 |
|---|
| Strand | + |
|---|
| Start bp | 4328304 |
|---|
| End bp | 4329197 |
|---|
| Gene Length | 894 bp |
|---|
| Protein Length | 297 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 641549003 |
|---|
| Product | LysR family transcriptional regulator |
|---|
| Protein accession | YP_001670107 |
|---|
| Protein GI | 167034876 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 38 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 44 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCCGCT ACAGCCGCCA CCTACCCCCG CTCGATACCC TGATCGCCTT CGAGGCTGTG
GCCCGTACTG GCAGTTTCAC CCGTGCCGCC GGCGAGCTTT ACCTGACTCA GAGCGCGGTA
TCCAAGCAGA TTCGCTTGCT CGAAGACCAG CTCGGCACCC AGCTGTTCGA ACGCCGCGCC
CGCGGCATTA CGCTGACCAC CGCTGGCGAG CACTTCCATG ATGTGGTCGA GCCGATGCTG
GACAAGCTGC TGGCCAACGT CCAGCGCCTG AAAAGCGGCC ATGGCAACCG CCATGTCAGC
GTCATCTGCA CCCATGCCGT GGCGCAATAC TGGTTGTTCC CGCGCCTGCT GCGCTTCAAC
GAACAGCACC CTGGGCTTAC GGTGAACATC CATGCCAGCA ACGACATCAA CGAGAGCCTG
GTTGCCGAAT ACGACTTCGG TATTCTCTAC GGGCATGGCC GCTGGCGTTC GCTGCAAGCC
AGCAAGCTGT TCGATGAAGT GATCTACCCG ATTGCCAGCA GCCGCTGGGA CATCAGCCAG
GTCGACAGCC TGGCGGCGCT GCAGGCCATG CCACTGATCC AGCTCGATGC CTCGGCCTGG
AACTGCCTGG ACTGGCACGA CTGGTTCGCC CATTTTGGCC AGCGCTATCA GGCACCCGCC
GATGCGCTCA CCTTCAACCA GGTGAACTTG GTGTTCGACG CGGTCATGCA AGGAATGGGC
GTGGGCCTGG GTTGGGAGTC CATGGCCCGT GAACGCATCA ACAGCGGCCT GATCCGCCAG
GTGTGCGATT TTGAAGTACG CACCGGTCAG GCCGACTACC TGGTGCACGA CCGCCAGGCT
CTGCCCTCAC CCGCCGCACA GGTGTTTGCC GAGTGGCTGC TGGCACAGGC CTGA
|
|---|
| Protein sequence | MSRYSRHLPP LDTLIAFEAV ARTGSFTRAA GELYLTQSAV SKQIRLLEDQ LGTQLFERRA
RGITLTTAGE HFHDVVEPML DKLLANVQRL KSGHGNRHVS VICTHAVAQY WLFPRLLRFN
EQHPGLTVNI HASNDINESL VAEYDFGILY GHGRWRSLQA SKLFDEVIYP IASSRWDISQ
VDSLAALQAM PLIQLDASAW NCLDWHDWFA HFGQRYQAPA DALTFNQVNL VFDAVMQGMG
VGLGWESMAR ERINSGLIRQ VCDFEVRTGQ ADYLVHDRQA LPSPAAQVFA EWLLAQA
|
|---|
| |