Gene PputGB1_3854 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPputGB1_3854 
Symbol 
ID5871648 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida GB-1 
KingdomBacteria 
Replicon accessionNC_010322 
Strand
Start bp4298365 
End bp4299720 
Gene Length1356 bp 
Protein Length451 aa 
Translation table11 
GC content64% 
IMG OID641548976 
Productxanthine permease 
Protein accessionYP_001670080 
Protein GI167034849 
COG category[F] Nucleotide transport and metabolism 
COG ID[COG2233] Xanthine/uracil permeases 
TIGRFAM ID[TIGR00801] uracil-xanthine permease
[TIGR03173] xanthine permease 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value0.00662261 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones33 
Fosmid unclonability p-value0.542415 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCCGAGT CACGCAAGGC GTATATCCCC ATTGCGCCGC CGCGCGAACC CTTGCCCCTG 
TTCCAACTGA TCCTGGTTGG CCTGCAACAC GTTCTGCTGA TGTACGGTGG CGCGATCGCC
GTGCCGTTGA TCATCGGCCA GGCCGCTGGG TTGTCCCGTG AAGAAGTCGC TTTCCTGATC
AACGCCGACC TGCTGGTCGC TGGCGTCGCT ACCATCATCC AGTCGTTCGG TATCGGCCCG
GTGGGCATCC GCATGCCGGT GATGATGGGT GCCAGTTTCG CGGCCGTCGG CAGCATGGTG
GCCATGGCCG GCATGCCCGG CGTAGGCCTG CAGGGGATCT TCGGTGCGAC CATCGCCGCC
GGGTTCTTCG GCATGCTGAT CGCCCCGTTC ATGTCCAAGG TCGTACGCTT CTTCCCGCCG
CTGGTCACCG GTACGGTGAT CACCTCGATT GGCCTGTCGC TGTTCCCCGT GGCAGTCAAT
TGGGCGGGTG GCGGCCATGA AGCCGAAACC TTCGGCTCGC CGATCTACCT GTTGGTGGCC
GGCTTGGTAT TGGCTGTGAT CCTGCTGATC AACCGCTTCA TGCGCGGCTT CTGGGTCAAC
GTGTCGGTAC TGGTGGGCAT GGGCCTTGGC TACATCCTGG CCGGCTCCAT CGGCATGGTC
GACCTGTCTG GCCTGAAGGA CGCGCCGTGG TTGCAGGTGG TCACCCCCCT GCACTTCGGC
ATGCCGACAT TCAGCCTGGC ACCCATCCTG TCCATGTGCC TGGTGGTGGT GATCATCTTC
GTCGAGTCCA CCGGCATGTT CCTGGCCCTG GGCAAGGTGA CCGATCGCGA AGTGACCCCC
GGCATGCTGC GTCGCGGCCT GCTGTGCGAT GCCGGTGCGT CGTTCATCGC CGGTTTCTTC
AACACCTTCA CCCACTCCTC GTTCGCCCAG AACATCGGCC TGGTGCAAAT GACCGGGGTG
CGCTGCCGCT TTGTCACCAT CGTGGCCGGT GCCCTGTTGA TCCTGCTCAG CCTGCTGCCC
AAGGCAGCCT TCCTGATTGC CTCGATCCCA CCTGCGGTAC TGGGCGGCGC GTCCATCGCC
ATGTTCGGCA TGGTCACCGC CACCGGGATC AAGATTCTTC AGGAGGCGGA CATCGGCGAC
CGCCGCAACC AGCTGCTGGT TGCCGTGAGC GTCGGCTTCG GGTTGATCCC CGTGGTGCGT
CCGGAGTTCT TCGCCCAGAT GCCACAGTGG ATGGAACCCA TCACCCACAG TGGTATCGCC
ATGGCCACGG TCAGTGCCCT GGTGTTGAAC GTCCTGTTCA ACATCCTCGG TGGTGCCGAC
CGCGCGGTGC ACAACGACGC CTGTCACCAG CATTGA
 
Protein sequence
MSESRKAYIP IAPPREPLPL FQLILVGLQH VLLMYGGAIA VPLIIGQAAG LSREEVAFLI 
NADLLVAGVA TIIQSFGIGP VGIRMPVMMG ASFAAVGSMV AMAGMPGVGL QGIFGATIAA
GFFGMLIAPF MSKVVRFFPP LVTGTVITSI GLSLFPVAVN WAGGGHEAET FGSPIYLLVA
GLVLAVILLI NRFMRGFWVN VSVLVGMGLG YILAGSIGMV DLSGLKDAPW LQVVTPLHFG
MPTFSLAPIL SMCLVVVIIF VESTGMFLAL GKVTDREVTP GMLRRGLLCD AGASFIAGFF
NTFTHSSFAQ NIGLVQMTGV RCRFVTIVAG ALLILLSLLP KAAFLIASIP PAVLGGASIA
MFGMVTATGI KILQEADIGD RRNQLLVAVS VGFGLIPVVR PEFFAQMPQW MEPITHSGIA
MATVSALVLN VLFNILGGAD RAVHNDACHQ H