Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PputGB1_3712 |
Symbol | |
ID | 5871505 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida GB-1 |
Kingdom | Bacteria |
Replicon accession | NC_010322 |
Strand | - |
Start bp | 4126197 |
End bp | 4128470 |
Gene Length | 2274 bp |
Protein Length | 757 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 641548834 |
Product | lysine decarboxylase |
Protein accession | YP_001669938 |
Protein GI | 167034707 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG1982] Arginine/lysine/ornithine decarboxylases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 0.709841 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 47 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCCTTCG GAGGTAGCCA CCTGATGTAC AAGGACCTCA AGTTCCCGAT CCTCATCGTC CACCGGGCTA TCAAGGCTGA CAGTGTCGCC GGGGAGCGCG TGCGGGGCAT CGCCGAGGAA CTGCGCCAGG ACGGTTTCGC CATTCTGGCC GCCGCCGACC ACGCCGAAGC GCGCCTGGTT GCCGCCACTC ACCACGGCCT GGCCTGCATG CTGATTGCCG CCGAAGGAGT TGGCGAAAAC ACCCACCTGC TGCAGAACAT GGCCGAGCTG ATCCGCCTGG CGCGCATGCG CGCGCCCGAC TTGCCGATCT TCGCCTTGGG CGAGCAGGTG ACCCTGGAAA ACGCCCCTGC CGAAGCCATG AGCGAGCTCA ACCAACTGCG TGGCATCCTT TACCTGTTCG AAGACACCGT GCCGTTTCTC GCCCGCCAGG TGGCGCGTGC CGCACACACC TACCTTGACG GTCTGCTGCC ACCGTTCTTC AAGGCCCTGG TGCAGCATAC CGCGCAGTCC AACTATTCCT GGCATACCCC GGGCCATGGC GGTGGCGTGG CCTATCATAA AAGCCCGGTA GGCCAGGCCT TCCACCAGTT CTTCGGGGAA AACACCCTGC GCTCGGACCT GTCTGTTTCA GTGCCGGAGC TGGGCTCGCT GCTCGACCAC ACAGGCCCCT TGGCCGAAGC CGAGGCCAGG GCGGCGCGCA ACTTCGGTGC CGACCACACC TTCTTCGTCA TCAATGGCAC CTCCACAGCC AACAAGATTG TCTGGCACGC CATGGTCGGT CGCGACGACC TGGTGTTGGT GGACCGCAAC TGCCATAAGT CAGTGGTGCA CGCGATCATC ATGACCGGCG CCATTCCGCT GTACCTGTGC CCAGAGCGCA ACGAGCTGGG CATCATCGGC CCGATCCCGC TCAGCGAGTT CAGCCCCGAG GCAATCGAGG CGAAGATCCA GGCCAACCCC CTTGCCCATG GCCGTGGGCA ACGTATCAAG CTGGCGGTAG TGACCAACTC CACCTATGAC GGGCTGTGCT ACCACGCCGG GATGATCAAG CAGGCCCTGG GTGCCAGCGT GGAAGTACTG CACTTCGACG AGGCCTGGTT CGCTTATGCG GCGTTTCACG GCTTCTTCAC CGGGCGCTAT GCCATGGGCA CTGCCTGCGC AGCCGACAGC CCGTTGGTGT TCAGCACCCA TTCCACCCAC AAGCTGCTGG CGGCGTTCAG CCAGGCCTCG ATGATCCATG TGCAGGACGG GGCCAGGCGG CAGCTGGACC GGGACCGCTT CAACGAAGCG TTCATGATGC ATATCTCGAC TTCGCCGCAG TACAGCATCC TTGCCTCGCT GGACGTGGCC TCGACCATGA TGGAAGGGCA GGCCGGGCAT TCGCTGTTGC AAGAAATGTT CGATGAGGCG CTGAGTTTTC GTCGTGCCCT GGCCAACCTG CGCGAGCACA TTGCTGCGGA TGACTGGTGG TTCAGTATTT GGCAGCCGCC CAGCACTGAA GGCATCCAGC CCTTGGCCGC GCAGGACTGG CTGCTGCAGC CGGGGGCGCA GTGGCATGGC TTTGGTGAGG TGGCGGACGG CTACGTGTTG CTCGACCCTC TGAAGGTGAC CCTGGTAATG CCGGGGCTGA GTGCGGGCGG TGTGCTGGGT GAGCGTGGCA TCCCGGCGGC GGTGGTCAGC AAGTTTCTCT GGGAGCGCGG GCTGGTGGTG GAAAAAACCG GCTTGTACAG CTTCCTGGTG CTGTTTTCCA TGGGCATCAC CAAGGGCAAG TGGAGCACCT TGCTCACCGA ACTGCTGGAG TTCAAGCGCC ACTATGACGG CAATACACCG CTGAGCAGTT GCCTGCCGAG TGTGGGGGTT GCCGATGCCT CACGCTACCG GGGCATGGGC CTGCGCGACC TGTGTGAACA GTTGCATGAC TGCTACCGTG CCAATGCCAC GGCCAAGCAG CTGAAGCGGG TGTTCACGCG TTTGCCGGAG GTGGCCGTGA GCCCCGCTCG GGCTTATGAC CAGATGGTAC GTGGCGAGGT GGAAGCGGTG CCGATCGAAG CTTTGCTGGG CCGTGTGGCC GCGGTGATGC TGGTGCCGTA CCCGCCCGGT ATTCCGTTGA TCATGCCGGG AGAGCGGTTC ACCGAGGCGA CCCGCTCGAT ACTTGACTAC TTGGCCTTCG CCCGAGCCTT CAACCAAGGC TTTCCGGGGT TTGTCGCGGA TGTTCACGGC CTGCAGAACG AAAATGGCCG CTACACCGTG GATTGCATCA TGGAATGCGA GTGA
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Protein sequence | MSFGGSHLMY KDLKFPILIV HRAIKADSVA GERVRGIAEE LRQDGFAILA AADHAEARLV AATHHGLACM LIAAEGVGEN THLLQNMAEL IRLARMRAPD LPIFALGEQV TLENAPAEAM SELNQLRGIL YLFEDTVPFL ARQVARAAHT YLDGLLPPFF KALVQHTAQS NYSWHTPGHG GGVAYHKSPV GQAFHQFFGE NTLRSDLSVS VPELGSLLDH TGPLAEAEAR AARNFGADHT FFVINGTSTA NKIVWHAMVG RDDLVLVDRN CHKSVVHAII MTGAIPLYLC PERNELGIIG PIPLSEFSPE AIEAKIQANP LAHGRGQRIK LAVVTNSTYD GLCYHAGMIK QALGASVEVL HFDEAWFAYA AFHGFFTGRY AMGTACAADS PLVFSTHSTH KLLAAFSQAS MIHVQDGARR QLDRDRFNEA FMMHISTSPQ YSILASLDVA STMMEGQAGH SLLQEMFDEA LSFRRALANL REHIAADDWW FSIWQPPSTE GIQPLAAQDW LLQPGAQWHG FGEVADGYVL LDPLKVTLVM PGLSAGGVLG ERGIPAAVVS KFLWERGLVV EKTGLYSFLV LFSMGITKGK WSTLLTELLE FKRHYDGNTP LSSCLPSVGV ADASRYRGMG LRDLCEQLHD CYRANATAKQ LKRVFTRLPE VAVSPARAYD QMVRGEVEAV PIEALLGRVA AVMLVPYPPG IPLIMPGERF TEATRSILDY LAFARAFNQG FPGFVADVHG LQNENGRYTV DCIMECE
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