| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_3355 |
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| Symbol | |
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| ID | 5871140 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida GB-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010322 |
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| Strand | + |
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| Start bp | 3786854 |
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| End bp | 3788194 |
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| Gene Length | 1341 bp |
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| Protein Length | 446 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 641548471 |
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| Product | HlyD family type I secretion membrane fusion protein |
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| Protein accession | YP_001669583 |
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| Protein GI | 167034352 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1566] Multidrug resistance efflux pump |
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| TIGRFAM ID | [TIGR01843] type I secretion membrane fusion protein, HlyD family |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 0.242422 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 36 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAGATCA TTCAGCACGC CGAATTGATC CCCGCCGAAG CCAACAACCT GATCGACCTG
GATGCAGGCC GCCCAGCACG CTGGGGGGTA TGGATGGTCA TTGCCGGCTT TGGCGGCTTT
CTGCTGTGGT CTTGCCTGGC GCCACTGGAT GCCGGGGTGG TCGCCACCGG CACGGTCAAG
GTCACCAGCA ACCGCAAGGC GGTACAACAC CTGAGCGGTG GCACGGTCGA GGCCATCCTG
GTGCGCGAAG GCGATGTGGT GAAAAAAGGC CAGGAAGTGG TGCGCCTCGA TGCCCTGCGC
GCGGTGGCCG AACAAGGCGC GCTCAGCGCC CAGTACATCG TCAGCAAAAC CGTGGAAAAC
CGCCTGGAAG CCGAACGCGA CGGCCGCGAC AACGTCACGT TCGACCCCGC CCTGCTCGAA
CACTATGGCA GTGACCCACG CTTGCTGGCA GCCATGGACC TGCAGCAGCG GCTGCTCGAC
ACCCGCCGCG CCGGGCTCGC CGGTGAACTG AACATCCTCG AAGAAAACCT CACGGCCTCG
GCGGTGCAAC TCAAGGGCCT GCAGCAGGTA TACGGCGCCC GCGCCTCGCA GATCGGCTTC
CTCAACCAGG AACTGCAAGG CACCCGCGTA CTCGCCGCCG AAGGCTATGT GCCGCGCAAC
CGCCTGCTGG AGCTGGAGCG CAGCAATGCC GACCTGGCCG CAGGCCAGGC CGAAAACCTC
AACAACATTG CCCGGGCGCG TAGCCAGGCC ACCGAAATCA AGCTGCGCAT GCTGCAACGC
CAGCACGACT ACCTGAAGGA AGTGGAATCG CAACTGACCG ACACCGCCAA GGAAAACACC
ACCCTGGCCG ACCGGTTGCG CGCGCTGGAC TATGAAGTGA CCCACACGGT GATCCGCTCG
CCCATCGACG GCATGGTCCA GGGCCTGAGC ATCGCCACGG TCGGCGGCAT TATCCAGCCA
GGTGCCAAGA TCATGGAAGT GGTGCCGCTC GACCAGCCGC TGCAGGTCGA TGCGATGATC
CCGGTACAGG CCATCGACAA GATGGTGCCA GGCCTGGCCG TAGACATCGC CTTCCCGGCT
TTCAACCATG CTCAGACGCC GAACATTCCA GGGCGGGTGA AGACCATTTC CGCCGACCGC
CTGCTCGACG AAGAAAGCAA GCAGCCGTTC TACCTGGCCC AGGTGGAAGT GACGCCAACC
GGCATGGGGC TGCTGGGCAG CAACCATATT CGCCCCGGCA TGCCCGCCAC CGTCACCATC
AAGACCGGCG AACGCAACCT GCTCAGTTAC CTGCTCAAAC CCATGCTCGA ACGCGTAGAC
GCCGCGTTCA AGGAGCAATG A
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| Protein sequence | MQIIQHAELI PAEANNLIDL DAGRPARWGV WMVIAGFGGF LLWSCLAPLD AGVVATGTVK
VTSNRKAVQH LSGGTVEAIL VREGDVVKKG QEVVRLDALR AVAEQGALSA QYIVSKTVEN
RLEAERDGRD NVTFDPALLE HYGSDPRLLA AMDLQQRLLD TRRAGLAGEL NILEENLTAS
AVQLKGLQQV YGARASQIGF LNQELQGTRV LAAEGYVPRN RLLELERSNA DLAAGQAENL
NNIARARSQA TEIKLRMLQR QHDYLKEVES QLTDTAKENT TLADRLRALD YEVTHTVIRS
PIDGMVQGLS IATVGGIIQP GAKIMEVVPL DQPLQVDAMI PVQAIDKMVP GLAVDIAFPA
FNHAQTPNIP GRVKTISADR LLDEESKQPF YLAQVEVTPT GMGLLGSNHI RPGMPATVTI
KTGERNLLSY LLKPMLERVD AAFKEQ
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