| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_3329 |
|---|
| Symbol | |
|---|
| ID | 5871114 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida GB-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010322 |
|---|
| Strand | + |
|---|
| Start bp | 3739877 |
|---|
| End bp | 3740950 |
|---|
| Gene Length | 1074 bp |
|---|
| Protein Length | 357 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 641548445 |
|---|
| Product | ABC transporter, periplasmic sulfonate-binding protein |
|---|
| Protein accession | YP_001669557 |
|---|
| Protein GI | 167034326 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG0715] ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 37 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 44 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACAATC CCTGGCGTCA TGCCCTTGCT CTGTTGGGCG GCCTGTTCCT CAGCCTGGCT
GCGCTGGCAG CCGAGCCACC GGCGGCGGTG CGCATTGCCA TCGTCGCCTT CACCCAGGGC
GGGGCGCCGG TGTTCGGCGG CATCCCCGGC CGGGTGATCG AGGAAGGCTG GCTGGAACAG
CAACTGGCCG CCCGCGGCGT GAAACTGCAA TGGACCGCCC TGCCCCATGC CGGCGCCGGG
CCACAGATCA ACGAAGGCTT CAGCAACGAC AGCCTGGACT TTGCCGTGCG TGGCGACCTG
CCTTCGGTCA TCGCCGGGTC TGGCCAGGTG CCGGGCAAGC TGGTGGTGCC GGGCGGTAGC
GGCAACAACA TCTACCTGGT GGTGCCGAGC AATTCCACTG TGCGCAGCAT CCAGGACCTC
AAGGGCAAAC GCCTGGCCCT GCACCGTGGT CGCCCGTGGG AGTTCGCCTT CAGCAACTTC
CTCGAAAGCC AAGGCCTGAA ACTGAGTGAT TTCAAGATCG CCAACCTCAA CCCGCAAGTG
GGCGCCGCTG CGGTTTCCGC CGGCAAGGTC GATGCCGCCG TGTTGCTCAA CGAAGCCTAT
GCCCTGGAAG ACAAAGGCGT GGCGCGCATT CTCTGGTCGA CCAAGCAAGG CGCCAATGAT
TGGCGGCTGG TCTCGGACCT GTGGGGCACC GACCGCTTCG TGCAGCAGCA CGCCGACCTG
ACGCAACTGG TGGCCACCGC CTGGGTGCGC GCGGCCTGGT GGATTTCCCA GGAACAGAAC
CGCGACGCCT ACTACGCGCT GTCATCGCGC GCAGGGGTCA GTGAAAGCGT GCTACGCCGT
GACGACCAGG ACGACCCCGT GGCCTGGCAA GCGCGCTGGG CGCCAAAAAG CGATGCGCAG
CTTAAAACCC ATTACGACGC CCTGGGCCAG TACGCACTGG CCAACCGGCT GATTCGCACG
CCCTACGACA TTACCAGCGA CCTGGCCACG GGCTTTACCC GCCAGGCCTT GATCGACTTG
CAACTGACCC ATTACTGGCC GTCCCTCGAC GCCCAGATCA GCCAACAACC TTGA
|
|---|
| Protein sequence | MNNPWRHALA LLGGLFLSLA ALAAEPPAAV RIAIVAFTQG GAPVFGGIPG RVIEEGWLEQ
QLAARGVKLQ WTALPHAGAG PQINEGFSND SLDFAVRGDL PSVIAGSGQV PGKLVVPGGS
GNNIYLVVPS NSTVRSIQDL KGKRLALHRG RPWEFAFSNF LESQGLKLSD FKIANLNPQV
GAAAVSAGKV DAAVLLNEAY ALEDKGVARI LWSTKQGAND WRLVSDLWGT DRFVQQHADL
TQLVATAWVR AAWWISQEQN RDAYYALSSR AGVSESVLRR DDQDDPVAWQ ARWAPKSDAQ
LKTHYDALGQ YALANRLIRT PYDITSDLAT GFTRQALIDL QLTHYWPSLD AQISQQP
|
|---|
| |