Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PputGB1_3254 |
Symbol | |
ID | 5871039 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida GB-1 |
Kingdom | Bacteria |
Replicon accession | NC_010322 |
Strand | - |
Start bp | 3651823 |
End bp | 3652689 |
Gene Length | 867 bp |
Protein Length | 288 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 641548370 |
Product | LysR family transcriptional regulator |
Protein accession | YP_001669482 |
Protein GI | 167034251 |
COG category | [K] Transcription |
COG ID | [COG0583] Transcriptional regulator |
TIGRFAM ID | [TIGR03339] aminoethylphosphonate catabolism associated LysR family transcriptional regulator |
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Plasmid Coverage information |
Num covering plasmid clones | 31 |
Plasmid unclonability p-value | 0.819694 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 30 |
Fosmid unclonability p-value | 0.147179 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCCACCG CCCGCTTGCG TACGTTCCTT GCCGTGGCCC GGCATGCCAG CTTCAGTGCC GGGGCCAGGG CCATTGGCCT CAGCCAGCCG ACCGCCACCA ACCAGGTCCA GGGGCTGGAG CGCGAATTCA ACGTCGAACT GTTCCACCGC CGTGGCCGGC GCATCGAGTT GACCGCCGTT GGCCGCGCCT TGTTGCCGAT TGCACAGCGG ATGTGGATGC TCGAAGCCGA GGCCACCAGC CTGCTGCGCG ACAGTGGCCA GCTTAACCGG GGGGAGCTGA AGATCGGTGC GGTGGGGCCG TTCCATGTGA TCGAGATGGT CGACCGCTAC CGGCAGGCGT ATCCACAGAT CGACGTGTCG ATTCGCGTGG GCAACTCGGC GTCGGTGCTG GCCGATCTTC AGGGCTACGT GACCGATATC GGCGTGTTGG CAGGGCTGCA TGATGACCCG GCGTTTGTCG CACAACGCTA TGCCAGGCAC GCGGTGATCC TGTTTGTCCG CGCCGATCAC CCGTTCGCCC GTCATGACCA GGTCCTGCTG CAGGCGTTGC AGGGGCAGCC GTTGCTGCGC CGTGAGCAAG GTTCAACTAC GCGGCTGGCG TTGGACAATG CACTGGATGC TGCCCAGGTA ACACCGCGTA TCGTCATGGA GATCGGCAGC CGCGAGGCGC TGCGCGAGGC GGTGATTCGT GGCATGGGTA TTGGTGCGGT GTCCGAGGCA GAATACATCG CCGACCCCCG CTTGAAAGTG ATCCGCATCG CACAGGACTC GGTGTATACC GAAACCTACC TGTACTACCT GGCCGAGCGA CAGGGCAGCC AGGTCATTGC GTCGTTTCAG CGCACGCTTC AAGGCTGGCA CGGCTGA
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Protein sequence | MSTARLRTFL AVARHASFSA GARAIGLSQP TATNQVQGLE REFNVELFHR RGRRIELTAV GRALLPIAQR MWMLEAEATS LLRDSGQLNR GELKIGAVGP FHVIEMVDRY RQAYPQIDVS IRVGNSASVL ADLQGYVTDI GVLAGLHDDP AFVAQRYARH AVILFVRADH PFARHDQVLL QALQGQPLLR REQGSTTRLA LDNALDAAQV TPRIVMEIGS REALREAVIR GMGIGAVSEA EYIADPRLKV IRIAQDSVYT ETYLYYLAER QGSQVIASFQ RTLQGWHG
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