| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_3231 |
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| Symbol | |
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| ID | 5871016 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida GB-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010322 |
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| Strand | + |
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| Start bp | 3619145 |
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| End bp | 3620482 |
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| Gene Length | 1338 bp |
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| Protein Length | 445 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 641548347 |
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| Product | type VI secretion protein |
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| Protein accession | YP_001669459 |
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| Protein GI | 167034228 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3522] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR03353] type VI secretion protein, VC_A0114 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 36 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 41 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTTCAC GCAACCCCGT CCTTTGGCCC GAAGGCCTGT TCGTAAAACC ACAGCATTTC
CAACAGGCGG CCAGGGCCAG TGAAGCAGCC CTGCACCAGC GCCTCGCCAG CCTCAATGCA
GCGTTCTATG GCTTCAGCGA AATACAGTTG AACGACGAGT ACCTGAGCCT TGGCAAGATA
GCCATCACTC GGGCGCGAGG CGTCATGCCG GACGGCACGG TATTCGACAT TCCCGCCGAC
CTGCCACCAC CACCGCCACT GGAAATCGGC GACGACGCTT GCAAGGACAG CGAGGTGTAT
CTGTGCCTGC CGCTGCGAAC CGATGGGGGG CGCGAAGTGA GCTGGCCCGA CAATGCTGCT
AACTTCCGCT ATACCGCCCA GGCACAGGAA ATCAAGGATA CCCACACCGC CGATGGCGAC
CTGGTAAACG TAGACCTTGC CGTGCCCAAC CTGCAGCTCA AGCGCAAGGC CCAGGACAGT
AGCGCCTACA CTCGCCTGGC ACTGGCACGC ATCCTGGAAC GGCGCCCCGA TGGCAGCCTG
CAGCTGGACG AAGCGTTCTA CCCTACCAGC GTGTCAGTGC GGGCGATACC AGCACTGCAG
CGGTTCCTGG ACGAAATCAC CAACACACTG CGCGAGCGCG CGCGGGGACT TGCCACACGC
ATTGGCGCAT CGGGCCAATC CGGTATCGCC GATATCCGCG ACTTCAACCT GCTGCAGGCC
ATGAACCGTT GGTGGCCATG CTTTCAGCAC CTGGCCAGGC AAGCGCAAAC GCACCCCGAG
CAGCTGTACC TGAGCATGAG CCAGGCCTGC GGCGAATTCG TCACTTTCAC CGACGAAAAC
AGACTGCCGC AGGAGTACCC GGCGTATCAC CACACTGCAC TGCACACCTC TTTCAAACCG
CTGGAAAACA CCTTGCGCCG ATCCCTGAGC ACGGTCCTGC GGCCACGCGC CGTGTCGCTA
CCGTTGGAGG GCGAAGCATT CGGCGTGATG ACAACCACGC TAGAGGACCG TCGCCTAATC
GACGAAGCCG ACTTCATCCT CGCCGTGCGC GCCGACCTGC CGCCACAGGC TTTGCGCCAG
ATGTTCATCC AGAAAGCCAA GATTACTTCA CTTGAGTCAT TGATCGACCT GGTGCCGCTA
CAACTGCCGG GCATCCCTTT GCGACCACTG CCGGTGGCCC CGCGTGACCT GCCCTTCCAT
GCAGGTTTCA GCTACTTCGA GTTGGACCGG CGTGACCCGA CCTGGGCATG CATGGCCAAG
GCAAATGGCT TCGGTATCCA CATCGCGGGC GAGTTCCCAG GACTTGAGCT GCAGTTCTGG
GCGATCAGGA GTGAGTGA
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| Protein sequence | MSSRNPVLWP EGLFVKPQHF QQAARASEAA LHQRLASLNA AFYGFSEIQL NDEYLSLGKI
AITRARGVMP DGTVFDIPAD LPPPPPLEIG DDACKDSEVY LCLPLRTDGG REVSWPDNAA
NFRYTAQAQE IKDTHTADGD LVNVDLAVPN LQLKRKAQDS SAYTRLALAR ILERRPDGSL
QLDEAFYPTS VSVRAIPALQ RFLDEITNTL RERARGLATR IGASGQSGIA DIRDFNLLQA
MNRWWPCFQH LARQAQTHPE QLYLSMSQAC GEFVTFTDEN RLPQEYPAYH HTALHTSFKP
LENTLRRSLS TVLRPRAVSL PLEGEAFGVM TTTLEDRRLI DEADFILAVR ADLPPQALRQ
MFIQKAKITS LESLIDLVPL QLPGIPLRPL PVAPRDLPFH AGFSYFELDR RDPTWACMAK
ANGFGIHIAG EFPGLELQFW AIRSE
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