| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_2838 |
|---|
| Symbol | |
|---|
| ID | 5870624 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida GB-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010322 |
|---|
| Strand | - |
|---|
| Start bp | 3180534 |
|---|
| End bp | 3181580 |
|---|
| Gene Length | 1047 bp |
|---|
| Protein Length | 348 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 641547956 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001669068 |
|---|
| Protein GI | 167033837 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG4188] Predicted dienelactone hydrolase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 0.540199 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 28 |
|---|
| Fosmid unclonability p-value | 0.173901 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCATTC CTCGCTGCTT GTTGGCGCTG GCTCTGCTCG GCGGCCTGTT GGCCCGCGCC
GAAGCCGCGC CCTGGGTTGC CGGCCTGCAC CACATGACCC TGGCCGACCC GGTCGATAGC
CGCCCGATGC AAGCGTTGGC GTTCTACCCG GCCAATGGCG CAACCCGGAG CAGCCGCATA
GATGGGTACC CGGTCGAAGT GGCCGAAGAA GCGCCCGTTG CCATGGGCCG GTTCCCGTTA
CTGGTACTGT CTCACGGCAA TAACGGCAGC CCGTTGGCCT TGCACTACCT TGCCACGTCG
TTGGCGCGCC AAGGGTTCGT GGTGGTCGCG GTGGTGCACC CAGGGGACAA CGCGCGCGAC
CACAGTCGCC TGGGCACCCT GAGCAATCTT TATGGGCGGC CGCTGCAAGT CAGCGCCGCC
ATTAGCGCTG CACGCGATGA TGCCGTGGTC GGGCCCTATC TGAATGAAGG CAAGGTGGGC
GTGATCGGCT ACTCGGCAGG CGGCGAAACC GCGTTGATCC TGTCTGGCGC GCGCCCTGAT
CTGGATCGGT TGCGTCAGTA TTGCCTAGAG CGCCCGAATG ACGCTGACGC CTGCAAGACC
CACGGCATAC TGATCGCCGA CCGCAGCGAG CTCGCGCCTG AGGCTGATCC GCGAGTGGGT
GCCGTGATGT TGATGGCGCC GCTAAGCCTA TTGTTCGGTC GTCATGCACT GGCCGGGGTG
CAGATACCCG CGCTGATCTA CAGCGGCGAC AGCGATCAAC TGGTGGCCGT GGACCGAAAT
GCCGAAGCCT TGGCCCGCAA GCTGCCAGTC ACGCCAGACT ATCGCCTGTT GGCCGGTGCC
GGGCATTTCG TGTTCATGGC CCATTGCGAT GCCGAGCAGT ATGCGCGGAT GCCGGCGCTG
TGCAAGGACG CCGACGGCGT CGACAGGCGG CATATCCATC GCTCGCTGCA ACGTGAAACG
GCAGCATTTT TCAGCCAGGC TTTGGGGGCA CCAGAGCCCG CCGAACGCTC AGCTGCGACG
GGCACGCCGC GCCAGCAGCA ACGTTAG
|
|---|
| Protein sequence | MTIPRCLLAL ALLGGLLARA EAAPWVAGLH HMTLADPVDS RPMQALAFYP ANGATRSSRI
DGYPVEVAEE APVAMGRFPL LVLSHGNNGS PLALHYLATS LARQGFVVVA VVHPGDNARD
HSRLGTLSNL YGRPLQVSAA ISAARDDAVV GPYLNEGKVG VIGYSAGGET ALILSGARPD
LDRLRQYCLE RPNDADACKT HGILIADRSE LAPEADPRVG AVMLMAPLSL LFGRHALAGV
QIPALIYSGD SDQLVAVDRN AEALARKLPV TPDYRLLAGA GHFVFMAHCD AEQYARMPAL
CKDADGVDRR HIHRSLQRET AAFFSQALGA PEPAERSAAT GTPRQQQR
|
|---|
| |