Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PputGB1_2765 |
Symbol | |
ID | 5870551 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida GB-1 |
Kingdom | Bacteria |
Replicon accession | NC_010322 |
Strand | + |
Start bp | 3101078 |
End bp | 3102580 |
Gene Length | 1503 bp |
Protein Length | 500 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 641547883 |
Product | EvpB family type VI secretion protein |
Protein accession | YP_001668995 |
Protein GI | 167033764 |
COG category | [S] Function unknown |
COG ID | [COG3517] Uncharacterized protein conserved in bacteria |
TIGRFAM ID | [TIGR03355] type VI secretion protein, EvpB/VC_A0108 family |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 0.0505652 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 30 |
Fosmid unclonability p-value | 0.262675 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACCGACA AGCAAACCGC ACCGCAACAG GCCGGCGAAC TGGTCGAAGT GGAAAACTTC GCCCCACAGC CCTCGCTGCT GGACAGCATC ATTTCGCAAA GCCGCGTGGC CCGTTCCGAC ACCGAGCGCA ACCGCACCCG CGACCTGATC GGCGAACTGG TGAACCAGGT GCTCGAAGGC GAAATGACCC CGAGCAAGGA CCTGATCGCC GTGCTCGATT CGCGTATCGC CGAAATCGAC GCGATGCTCT CCGAGCAGAT GAACGAAATC ATGCACGCTC GCGAGTTCCA GCAGCTGGAA GCTTCCTGGC GTGGCCTGAA GTACCAGGTA GACCAGACCG AAACCAGCAC CACGCTGAAG ATTCACCTGC TCAATGCCTC GAAGAAAGAC CTGGTACGTG ACCTGAAGGC CGCCAGCGAA TTCGACCAGA GCGCACTGTT CAAGAAAGTC TACGAAGAAG AATACGGCAC CTTCGGTGGT GCGCCGTTCG GCATGCTGAT CGGCGACTAC GAGTTCAACC GCAACCCCGA AGACATGTAC CTGCTGGAAG AGATCTCGCA CGTGGCCGCA GCGGCGCACG CGCCGTTCAT CTCCGCCGCC TCCCCTGAAC TGTTCGGCTG GGACTCGTTC ACCGAGATGT CCGGCCCGCG TGACCTGGCG AAGATCTTCG ACACCGTCGA ATACGCCAAG TGGAAGTCGT TCCGCGCATC GGAAGACTCC CGCTACGTCG GCCTCACCCT GCCCCACGTG CTCGGCCGCC TGCCGTATGG CCCCGATACC ACGCCGGTGG AGGAATTCAA CTTCGTCGAA AGCGTCGACG GCCGCGACCA CAACAAGTAC CTGTGGATGA ACGCCGCCTA TGCCCTTGGC ACCCGCGTCA CCGATGCCTT CGCCCGCTAC GGCTGGTGCG TGGCCATCCG CGGCGTGGAA GGGGGCGGCC TGGTCGAAGG CCTGCCGACC CACACCTTCA ACACCGACGA TGGCGAAATC GCCCTCAAGT GCCCTACCGA AATCGCCATT ACCGACCGCC GCGAAAAAGA GCTGTCGGAC CTGGGCTTCA TCCCTCTGGT GCACTGCAAG GGCACCGACT ATGCCGCCTT CTTCGGCACC CAGTCGGCGC AGAAGCAAAA GCAGTACAAC ACCGACATCG CCAATGCCAA TGCACGCCTG TCGGCCCAAC TGCAATACAT CTTCGCCACC TCGCGTATCG CCCACTACAT GAAGGCGATC ATGCGCGACA AGATCGGCAG CTTCGCCTCG CGCATGGACG TGGAGCGCTT CCTCAACCAG TGGCTGGCCA GCTATGTGCT GCTCGACGAT ACCGCCAGCC AGGAAGCCAA GGCCAAGTTC CCGCTGCGTG AGGCCCGCGC CGAGGTGTTC GAGGTGCCAG GCAAGCCAGG CGTGTACAAG GCCGTCACGT ACCTGCGCCC GCACTACCAA CTGGACGAAC TGACCGCCTC GCTGCGGCTG GTCGCCGAGC TGCCACAAGG CGCGCGCGGC TGA
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Protein sequence | MTDKQTAPQQ AGELVEVENF APQPSLLDSI ISQSRVARSD TERNRTRDLI GELVNQVLEG EMTPSKDLIA VLDSRIAEID AMLSEQMNEI MHAREFQQLE ASWRGLKYQV DQTETSTTLK IHLLNASKKD LVRDLKAASE FDQSALFKKV YEEEYGTFGG APFGMLIGDY EFNRNPEDMY LLEEISHVAA AAHAPFISAA SPELFGWDSF TEMSGPRDLA KIFDTVEYAK WKSFRASEDS RYVGLTLPHV LGRLPYGPDT TPVEEFNFVE SVDGRDHNKY LWMNAAYALG TRVTDAFARY GWCVAIRGVE GGGLVEGLPT HTFNTDDGEI ALKCPTEIAI TDRREKELSD LGFIPLVHCK GTDYAAFFGT QSAQKQKQYN TDIANANARL SAQLQYIFAT SRIAHYMKAI MRDKIGSFAS RMDVERFLNQ WLASYVLLDD TASQEAKAKF PLREARAEVF EVPGKPGVYK AVTYLRPHYQ LDELTASLRL VAELPQGARG
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