| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_2288 |
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| Symbol | |
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| ID | 5870077 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida GB-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010322 |
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| Strand | - |
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| Start bp | 2549230 |
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| End bp | 2550978 |
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| Gene Length | 1749 bp |
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| Protein Length | 582 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 641547413 |
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| Product | choline/carnitine/betaine transporter |
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| Protein accession | YP_001668525 |
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| Protein GI | 167033294 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1292] Choline-glycine betaine transporter |
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| TIGRFAM ID | [TIGR00842] choline/carnitine/betaine transport |
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 33 |
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| Fosmid unclonability p-value | 0.529795 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCAAAGG AACACATCAC AGAAACACTC GATCTTGGCG TGACAGACCC CTCGAAAACC
GCAGAAGCCC GCCAGGACCG ACATTTCGAG GGCAAACTCG ACTGGATCGT CTTTGGCTTC
ACCAGCCTCC TGGCCATCGC ATTCGTGCTC TGGGGCTTCC TCAACCAGGC CAGCCTGGCC
AGCAGCGCCT CCAGCGCGCA ATCCTGGGTC ATTCTCAATT TTGGCTGGTT CTTCGTGCTC
ACTTCCACCC TGTTCGTGGT GTTCGTGCTG TGGCTGGCCG CCAGCCGCTA CGGCAGAATT
CCGTTGGGCC GTGATGGCGA ACAGCCGGAG TTCCGCACGG TGTCCTGGGT AGCAATGATG
TTCAGCGCAG GCATGGGTAT CGGCCTGATG TTCTTCGGCG TGGCCGAGCC ACTGTCGCAC
TACGTATCGC CGCCGCCCGG TTCGGCCAGC GGGCAGACCA GCGAAGCGAT GCAGGTGGCG
ATGGCCACCA CCCTGTTCCA CTGGACCCTG CACCCCTGGG CCATGTACGC CATCGTCGGC
CTGGTGATCG CCTACGGCAC CTTCCGCCGT GGCCGCTCGC AGTTGATTTC CGCAGCCTTC
CGGCCGCTGA TCGGCAAGCA CGCCAACGGC CCACTCGGCC GCCTGATCGA CATGATGGCG
ATTTTCGCCA CGCTGTTCGG CTCGGCCGCC TCGCTGGGCC TGGGTGCGCT GCAGATTGCC
GGCGGCCTGG AATACAACGG CTGGATCGAA AGCCCCGGCA AGCTGTTCTA CATCTCGATC
ATTACCCTGC TGACCATTGC CTTCGTCACC TCGGCGGTGT CGGGCATCGG CAAGGGCATC
CAGTGGCTTT CCAACACCAA CATGGTGCTG GCGCTGGTGC TGGCGGTGTT CGTGTTCATG
GTCGGGCCAA CCCTGTTGAT GCTCAACCTG CTGCCGACAT CGCTCGGCAT CTACATCAAG
ATGCTCCCGG AAATGATGGC CCGCACCAAC GCCAGTGGCG GCGAGCAGAT GAACAACTGG
CTGGCCGGCT GGACCGTGTT CTACTGGGCC TGGTGGATTT CCTGGACGCC ATTCGTGGGC
ATGTTCATCG CCCGCATCAG CCGCGGCCGC ACCATCCGCC AGTTCGTTAC AGGGGTGCTG
CTGGTGCCGA GCCTGGTCAG CCTGGTGTGG TTCACCATCT TCGGCGGCGC CGCCATCGAT
GCCGTGCGCG AGGGTGCCCT CCAATTGGCC AACGGTACGG TCAACAGCAA CCACGCGTTG
TACCAACTGC TGGACAGCTA CCCGCTGGCC TCGGCGACTT CGGTGCTGGT GATGATCCTG
GTAGGCATTT TCTTCGTCTC GGGAGCCGAT GCAGCCTCGC TGGTGATGGG CACGCTATCG
GAACACGGCA CCACCGCGCC ATCACGGCGC ACGGTAATTT TCTGGGGCGC GCTGACCGGG
ACGGTGGCGG CGATCATGCT GGCGATTGGC GACCCGCGTG ACCCCGGCGA GGCACTGACC
GGGCTGCAGA ACCTGACCAT CGTCGTCGCC TTGCCGTTCG TGATGGTGAT GGTACTGCTG
TGCCTGGCGC TTTACCGCGA CCTGCGCAAG GACCCGATGA TGCTGCGTCA CCTGCGCGGC
AACGAACTGA TCGAAAAAGC CGTGCTGTAT GGTGCGGTAA AGCATGGTGA GGAATTTTAC
ATTGTGGTGC AGGAAAAGAA GGCTTCGACA AAGCCGGTAA CGGCAGCGAA CGAAGTTTCC
CAAACCTGA
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| Protein sequence | MAKEHITETL DLGVTDPSKT AEARQDRHFE GKLDWIVFGF TSLLAIAFVL WGFLNQASLA
SSASSAQSWV ILNFGWFFVL TSTLFVVFVL WLAASRYGRI PLGRDGEQPE FRTVSWVAMM
FSAGMGIGLM FFGVAEPLSH YVSPPPGSAS GQTSEAMQVA MATTLFHWTL HPWAMYAIVG
LVIAYGTFRR GRSQLISAAF RPLIGKHANG PLGRLIDMMA IFATLFGSAA SLGLGALQIA
GGLEYNGWIE SPGKLFYISI ITLLTIAFVT SAVSGIGKGI QWLSNTNMVL ALVLAVFVFM
VGPTLLMLNL LPTSLGIYIK MLPEMMARTN ASGGEQMNNW LAGWTVFYWA WWISWTPFVG
MFIARISRGR TIRQFVTGVL LVPSLVSLVW FTIFGGAAID AVREGALQLA NGTVNSNHAL
YQLLDSYPLA SATSVLVMIL VGIFFVSGAD AASLVMGTLS EHGTTAPSRR TVIFWGALTG
TVAAIMLAIG DPRDPGEALT GLQNLTIVVA LPFVMVMVLL CLALYRDLRK DPMMLRHLRG
NELIEKAVLY GAVKHGEEFY IVVQEKKAST KPVTAANEVS QT
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