| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_2268 |
|---|
| Symbol | |
|---|
| ID | 5870057 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida GB-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010322 |
|---|
| Strand | - |
|---|
| Start bp | 2529935 |
|---|
| End bp | 2531560 |
|---|
| Gene Length | 1626 bp |
|---|
| Protein Length | 541 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 641547393 |
|---|
| Product | methyl-accepting chemotaxis sensory transducer |
|---|
| Protein accession | YP_001668505 |
|---|
| Protein GI | 167033274 |
|---|
| COG category | [N] Cell motility
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0840] Methyl-accepting chemotaxis protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 0.255239 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 39 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAGTTAC GGAATATGAA GATCGGCATT CGCGCTGCCA GCGTATTCGC CCTGTTGGGC
ATCCTGGTCC TGTTCATGGG CCTTATCGCA CTCTACGAAA CCCGCCAGAT GGACACGGCT
ACCGACGAGA TCCGGGTCAC CTGGATGCCC GCCGTGGTGG CGTTGGGTGA CATCAGCAGC
AACCTCGGGC GCGCTCGCGC CGTCACCCTG CGCGCCGCGC TGGACGACAA CCCCGACGAA
CGCACACGCA ACCTGCAGCT GCTCGATGGC ATCAATGCCG AGCTCAAGGA TGGGTTGAAA
GCCTACGCCG ATACCATCAT CGCGGCCGAC GACCGTGCCC TGTTCAACAC GTTCAACGAC
GCCTACCAGC AGTATTTCGA CCTGCAAGTG AGGGTGCTGC AGGACATTGC TGCTGGCCGC
ATGAGCGAGG CCAAGCAGCA GATCGGCGGC CCACTCACGC AGCGCGCCGA CGGCATGATG
AAGGCCTTGA CCGCGTTGAT CGCCTACAAC AGCAAGGGTG CCGAAGATGC CTCGCAGCGC
AGCAGCGATG TGGCCGACGA GGCATTCACT GCCATCATCG TCTCGTTGCT GGTGATCATG
CTTGCGCTCG CCGCCATTGC CACCGTGCTC ACCCGCAGTA TCGTTGTGCC GCTGGCCGAT
GCCGTGGCTG TCGCCGAGCG TGTGGCCACC GGCGACCTCA CCCGGGAAAT TCGCGTGATC
GGCCAGGACG AGCCAGCCTT GCTGCTGCGC GCCTTGGGCC GTATGCAAGA CAGCCTTCGC
GACACCCTGC GCAAGATCGC GGCTTCGTCC GACCAACTGG CCTCGGCCTC GGAAGAGCTG
CACACGGTCA CTGAGGACAC CAGCCGTGGC CTGCACCAGC AGAGCGCAGA AATCGACCAG
GCGGCGACGG CCGTCAACCA GATGACTGCA GCGGTCGAGG AAGTGGCGAA CAATGCGGTC
AGCACCGCCG ACGCCTCGAA AGGCGCCGAC CAGACTACCC GCGACGGCCG CGACCGGGTC
AACCAGGCAC TGGCGTCCAT CCAGCACCTG GTGGCTGACG TGACCGGTAC CTCGGCCGAG
ATCGAACAGC TGGCCACCAA TGCCAACGAA ATCAGCCGCG TGCTGGATGT GATTGGTGCG
ATTGCCGGGC AGACCAACTT GCTGGCGTTG AACGCCGCCA TCGAAGCGGC TCGCGCTGGT
GAGGCAGGCC GTGGCTTTGC CGTGGTGGCC GACGAGGTCC GCGCCCTCGC CCACCGCACC
CAGCAGTCGA CGGCAGAGAT CGAGCAAATG ATTGCCGGTA TCCAGAACGG TACCGAACGC
GCGGTGACGG CGATGCACAG CAGCCAGGGG CGTGCCACCG GCACGTTGGA GGTGGCGCAA
GGCGCCGGGC TGGCGTTGGA AGTGATTGCC GAGGCGATTG CGTCGATCAA CCAGCGCAAC
CTGGTGATTG CCAGTGCTTC GGAGGAGCAG GCACAGGTGG CGCGGGAGGT GGACCGTAAC
CTGGTGAACA TTCGCGACCT GGCGATGCAG ACGTCGGCAG GGGCGAACCA GACCAGTGCG
GCGGCACAGG ATTTGTCGCG GTTGGCGGTG GATCTGAACG GCATGGTGGC GCAGTTCAAG
GTCTGA
|
|---|
| Protein sequence | MQLRNMKIGI RAASVFALLG ILVLFMGLIA LYETRQMDTA TDEIRVTWMP AVVALGDISS
NLGRARAVTL RAALDDNPDE RTRNLQLLDG INAELKDGLK AYADTIIAAD DRALFNTFND
AYQQYFDLQV RVLQDIAAGR MSEAKQQIGG PLTQRADGMM KALTALIAYN SKGAEDASQR
SSDVADEAFT AIIVSLLVIM LALAAIATVL TRSIVVPLAD AVAVAERVAT GDLTREIRVI
GQDEPALLLR ALGRMQDSLR DTLRKIAASS DQLASASEEL HTVTEDTSRG LHQQSAEIDQ
AATAVNQMTA AVEEVANNAV STADASKGAD QTTRDGRDRV NQALASIQHL VADVTGTSAE
IEQLATNANE ISRVLDVIGA IAGQTNLLAL NAAIEAARAG EAGRGFAVVA DEVRALAHRT
QQSTAEIEQM IAGIQNGTER AVTAMHSSQG RATGTLEVAQ GAGLALEVIA EAIASINQRN
LVIASASEEQ AQVAREVDRN LVNIRDLAMQ TSAGANQTSA AAQDLSRLAV DLNGMVAQFK
V
|
|---|
| |