Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PputGB1_2233 |
Symbol | |
ID | 5870022 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida GB-1 |
Kingdom | Bacteria |
Replicon accession | NC_010322 |
Strand | + |
Start bp | 2492124 |
End bp | 2493458 |
Gene Length | 1335 bp |
Protein Length | 444 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 641547358 |
Product | general substrate transporter |
Protein accession | YP_001668470 |
Protein GI | 167033239 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG2814] Arabinose efflux permease |
TIGRFAM ID | [TIGR00883] metabolite-proton symporter |
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Plasmid Coverage information |
Num covering plasmid clones | 33 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 34 |
Fosmid unclonability p-value | 0.527639 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCCAGCA CCACCCTGAA TCCCTCCACC TTCGAAGGCC CTGCGCACAA CACCGAACGC CAGGCCTTGC GCAAGGCCGC ACGGGCCAGC TTCATGGGCA ATTTCGTCGA GTGGTTCGAC TACGCTGCCT ACGGCTATCT GGCCACCATC ATCGCCGCCA CGTTCTTCCC GCAGACCGAC AAGACCACCG GCCTGCTGGC GACCTTTGCG GTATTTGCCC TGTCGTTCCT GGTACGCCCG CTGGGCGGCA TTGTCTGGGG GCATTTCGGT GACCGCCATG GCCGGCGCAA TGCGTTGTCG TGGTCGATCC TGATCATGTC GGTGTCCACC TTCTGCATCG GCCTGTTGCC CGGTTATGCG CAAATCGGCC TGTGGGCGCC GGGCTTGTTG CTGTTGATAC GCCTGGTGCA GGGCTTTTCC GCCTCGGGCG AGTACGCCGG TGCTGCGGCG TTCCTGGCGG AATACGCGCC ACCTGGCCGG CGGGGTTTGT ACACCAGCAT CGTGCCGGCC AGCACGGCGG CGGGGCTGCT GTTCGGGGCG GCGTTCGTCG CGGTGCTGCA CGAGCTGCTC AGCAATGAGG CTCTGCACGA GTGGGGCTGG CGCTTGCCGT TTCTGTTGGC CGCGCCGTTC GGCCTGGTGG GGCGCTACAT CCGCATGAGC CTGCAAGACA CGCCCAAGTT CCTGGAGATG GAGCAGCGCC TGGAGCACAA GGCCGGCATG GCCCCGACAC CGCTGCGCGA ACTGCTGGGC CAGCACCGGC GCAGCCTGGC CATCGGTATT GGTGTCACCT GCCTGAACGC GGTGGCGTTC TACCTGTTGC TCAGCTACAT GCCGACCTAC CTGTCCAGTG AAATGGGCAT GAGCGAGCGG GATTCGTTCA TCGCTTCGAC GGTGTCGCTG GCCACGTACA TCGGCTTGAT TTTCCTGATG GGGCGGCTGT CCGACCAGTT TGGTCGCAAG ACCATGCTGG TGGTGGCTTC GCTGTTGTTC CTGGGGTTGA CCGTGCCGTT GTTCCGCCTG CTCGACGGGC AGCCGTTGCT GGTGATTCTG ACGATCCAGA TTGTTTTCGG GGCGATGTTG GCAATGAATG ACGGGACCTT GCCGTGCCTG CTGGCGGAAA TCTTCCCCAC CCGTGTGCGT TTCAGTGGCT TTGCCCTGAG TTTCAATGTG GCCAATGCGC TGTTTGGCGG GACAGCGCCG TTCATTGCCA CCTGGTTGAT ACAGGTGACC GGCAGCAAGC TGGCACCGGC GGGGTATTTG CTGGCGGCAG CGTTGGTTGC TCTGGTGGCC ATGCTGATGT GCCGGGAGAC GGCCCACACG GCCCTGGAGG ATTGA
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Protein sequence | MSSTTLNPST FEGPAHNTER QALRKAARAS FMGNFVEWFD YAAYGYLATI IAATFFPQTD KTTGLLATFA VFALSFLVRP LGGIVWGHFG DRHGRRNALS WSILIMSVST FCIGLLPGYA QIGLWAPGLL LLIRLVQGFS ASGEYAGAAA FLAEYAPPGR RGLYTSIVPA STAAGLLFGA AFVAVLHELL SNEALHEWGW RLPFLLAAPF GLVGRYIRMS LQDTPKFLEM EQRLEHKAGM APTPLRELLG QHRRSLAIGI GVTCLNAVAF YLLLSYMPTY LSSEMGMSER DSFIASTVSL ATYIGLIFLM GRLSDQFGRK TMLVVASLLF LGLTVPLFRL LDGQPLLVIL TIQIVFGAML AMNDGTLPCL LAEIFPTRVR FSGFALSFNV ANALFGGTAP FIATWLIQVT GSKLAPAGYL LAAALVALVA MLMCRETAHT ALED
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