Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PputGB1_2206 |
Symbol | |
ID | 5869995 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida GB-1 |
Kingdom | Bacteria |
Replicon accession | NC_010322 |
Strand | + |
Start bp | 2464323 |
End bp | 2465258 |
Gene Length | 936 bp |
Protein Length | 311 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 641547331 |
Product | catechol 1,2-dioxygenase |
Protein accession | YP_001668443 |
Protein GI | 167033212 |
COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
COG ID | [COG3485] Protocatechuate 3,4-dioxygenase beta subunit |
TIGRFAM ID | [TIGR02439] catechol 1,2-dioxygenase, proteobacterial |
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Plasmid Coverage information |
Num covering plasmid clones | 27 |
Plasmid unclonability p-value | 0.400147 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 30 |
Fosmid unclonability p-value | 0.251033 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACCGTGA AAGTTTCCCA CACTGCCGAC ATTCAAGCCT TCTTCAAGCA GGTGGCTGGC TTGGACCACG CCGAAGGCAA CCCGCGCTTC AAGCAGATCA TCCTGCGCGT GCTGCAAGAC ACTGCACGCC TGGTCGAAGA CCTGGAGATC ACCGAAGACG AGTTCTGGCA CGCCGTTGAC TATCTCAACC GCCTGGGCGG CCGTAACGAG GCGGGCCTGC TGGCTGCTGG CCTGGGCATC GAGCACTTCC TCGACCTGCT GCAAGACGCC AAGGACGCCG AAGCCGGCCT TGCTGGCGGC ACTCCGCGCA CCATCGAAGG CCCGCTGTAC GTCGCCGGGG CGCCGCTGGC GCAAGGCGAA GTGCGCATGG ACGACGGCAC CGACCCAGGT GTGGTGATGT TCCTCCAGGG CCAGGTGTTC GATGCCGACG GCAAGCCGTT GGCCGGTGCC ACCGTCGACC TGTGGCATGC CAACACCCAG GGCACCTATT CGTACTTTGA CTCGACCCAG TCCGACTACA ACCTGCGCCG GCGCATCATC ACCGATGCCG AGGGCCGCTA CCGTGCACGT TCGATCGTGC CGTCGGGGTA TGGTTGCGAT CCGCAGGGGC CGACCCAGGA ATGCCTGGAC CTGCTCGGCC GTCATGGCCA GCGCCCGGCG CATGTGCACT TCTTCATCTC GGCGCCGGGG TACCGCCACC TGACCACGCA GATCAACTTC GAGGGTGACA AGTACCTGTG GGACGACTTT GCCTACGCCA CCCGTGACGG GCTGATTGGC GAGCTGCGCT TTGTCGAAGA TGCGGCGGCG GCGCGTGACC GTGGCGTGCA AGGCGAGCGC TTTGCCGAGC TTTCGTTCGA CTTCCACCTG CAGGGGGCCG CGGCGCCGGA GGCCGAGGCG CGCAGCCACC GGCCGCGTGC GTTGCAGGAA GGCTGA
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Protein sequence | MTVKVSHTAD IQAFFKQVAG LDHAEGNPRF KQIILRVLQD TARLVEDLEI TEDEFWHAVD YLNRLGGRNE AGLLAAGLGI EHFLDLLQDA KDAEAGLAGG TPRTIEGPLY VAGAPLAQGE VRMDDGTDPG VVMFLQGQVF DADGKPLAGA TVDLWHANTQ GTYSYFDSTQ SDYNLRRRII TDAEGRYRAR SIVPSGYGCD PQGPTQECLD LLGRHGQRPA HVHFFISAPG YRHLTTQINF EGDKYLWDDF AYATRDGLIG ELRFVEDAAA ARDRGVQGER FAELSFDFHL QGAAAPEAEA RSHRPRALQE G
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