| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_2124 |
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| Symbol | |
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| ID | 5869913 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida GB-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010322 |
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| Strand | + |
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| Start bp | 2374388 |
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| End bp | 2375092 |
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| Gene Length | 705 bp |
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| Protein Length | 234 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 641547249 |
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| Product | short-chain dehydrogenase/reductase SDR |
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| Protein accession | YP_001668361 |
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| Protein GI | 167033130 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 30 |
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| Plasmid unclonability p-value | 0.522022 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.0000985136 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGTCAGTAG AAAAAGTAGC AATAGTCACT GCCGGTGGTA GCGGCATGGG AGCGGCGGCA
GCACGTAGAT TGGCTGCCGA TGGCTTCAAG GTCGGTATTC TCTCTTCATC TGGCAAGGGC
GAGGCCCTGG CGCAGGAATT AGGCGGCATT GGCGTAACCG GCAGTAACCA GTCAAATGAA
GATCTGCAGC GCCTCGTCGA CGCAGTCATT CATAAATGGG GCCGTATCGA TGTGTTGGTC
AACAGCGCCG GCCATGGTCC GCGGGCACCG ATCCTTGAGA TCAGCGACGA AGACTGGCAC
CAGGGTATGG AGACATACCT GCTCAACGTA ATTCGTCCTG TGAGGCTGGT GACCCCGTAC
ATGCAGCGCC AGAACGGTGG TGCAATCATC AACATTTCCA CTGCATGGGT GTTCGAGCCA
AGCGAACTCT TCCCTACCTC GGCAGTTTTC CGTGCCGGTT TGGCGTCGTT CAGCAAAATC
TATGCTGACA AGTACGCCGC TGACAACATT CGCATTAATA ACGTGCTGCC TGGTTGGATC
GACAGCCTCC CAGCTACCGA ACAGCGTCGA GAAGGTGTGC CGCTCAAGCG CTATGGCACC
AGTGAGGAAA TTGCCGCCAC TATCGCCTTC CTCGCAAGCG AAGGGGCAGC CTACATTACC
GGCCAGAACA TCAAGGTCGA CGGCGGCGTT ACCCGCAGCG TCTGA
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| Protein sequence | MSVEKVAIVT AGGSGMGAAA ARRLAADGFK VGILSSSGKG EALAQELGGI GVTGSNQSNE
DLQRLVDAVI HKWGRIDVLV NSAGHGPRAP ILEISDEDWH QGMETYLLNV IRPVRLVTPY
MQRQNGGAII NISTAWVFEP SELFPTSAVF RAGLASFSKI YADKYAADNI RINNVLPGWI
DSLPATEQRR EGVPLKRYGT SEEIAATIAF LASEGAAYIT GQNIKVDGGV TRSV
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