| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_2091 |
|---|
| Symbol | |
|---|
| ID | 5869880 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida GB-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010322 |
|---|
| Strand | - |
|---|
| Start bp | 2344409 |
|---|
| End bp | 2345434 |
|---|
| Gene Length | 1026 bp |
|---|
| Protein Length | 341 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 641547216 |
|---|
| Product | extracellular solute-binding protein |
|---|
| Protein accession | YP_001668328 |
|---|
| Protein GI | 167033097 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0687] Spermidine/putrescine-binding periplasmic protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 31 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 53 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTGTTGA GCAAACGTGT AACCGCAGTG CTGTCCGCCA GCCTGCTGAC CCTGGCATGT
CAGGCCGCCC AGGCCGCCGA CAGCCTGAAC TTCGTCAGCT GGGGCGGTAC CACCCAGGAC
GCCCAGAAAG AAGCGTGGGC CGTACCGTTC AGCAAAGCCA CCGACATCAA GGTCGTGCAG
GACGGCCCCA CCGACTACGG CAAGCTCAAG GCCATGGTCG AGAGCGGCAA CGTGCAGTGG
GATGTGGTTG ACGTCGAAGC CGACTTTGCC CTGCGTGCCG CCAGCGAAGG CCTGCTCGAA
CCCCTCGATT TCAACCAGAT AAAGCGCGAC AAGATCGACC CGCGATTCGT CTCCGACCAC
GGCGTCGGCT CGTTCTTCTT CTCCTTCGTA CTCGGCTACA ACGAAGGCAA GCTCGGTGCC
AACAAACCGG TGGACTGGAC CGCGCTGTTC GACACCAAGA CCTACCCCGG CAAACGTGCC
CTGTACAAGT GGCCGAGCCC CGGCGTGCTG GAACTGGCCC TGCTGGCCGA CGGCGTAGCC
CCAGACAAGC TGTACCCGCT GGACCTGGAC CGCGCCTTTA AGAAGCTCGA CACCATCAAG
AAAGACATCG TCTGGTGGGG CGGCGGTGCC CAGTCGCAAC AGCTGCTGGC CTCGGGTGAA
GCCTCGCTTG GCCAGTTCTG GAACGGCCGC GTCTATGCCC TGCAGCAAGA TGGCGCACCG
GTGGGCGTGA GCTGGAAGCA GAACCTGGTC ATGGCCGACT TCCTGGTCAT TCCCAAAGGC
GCCAAGAACA AGGATGCGGC CATGAAATTC CTGGCCAACG CCAGCAGCGC CGAAGGCCAG
GCCGAGTTCG CCAACAAGAC CGCCTACGCG CCGGTCAACG TCGACAGCGT GGCCAAGCTG
GACAAAGACC TGGCGCCGAA CCTGCCAACA GCCTACGCCC AGGACCAGGT CACCCTCGAC
TTCGCCTACT GGGCCAAGAA CGGTCAAGCC ATCGCGGCCC GCTGGAATGA GTGGTTGGTC
AAATGA
|
|---|
| Protein sequence | MLLSKRVTAV LSASLLTLAC QAAQAADSLN FVSWGGTTQD AQKEAWAVPF SKATDIKVVQ
DGPTDYGKLK AMVESGNVQW DVVDVEADFA LRAASEGLLE PLDFNQIKRD KIDPRFVSDH
GVGSFFFSFV LGYNEGKLGA NKPVDWTALF DTKTYPGKRA LYKWPSPGVL ELALLADGVA
PDKLYPLDLD RAFKKLDTIK KDIVWWGGGA QSQQLLASGE ASLGQFWNGR VYALQQDGAP
VGVSWKQNLV MADFLVIPKG AKNKDAAMKF LANASSAEGQ AEFANKTAYA PVNVDSVAKL
DKDLAPNLPT AYAQDQVTLD FAYWAKNGQA IAARWNEWLV K
|
|---|
| |