| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_2038 |
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| Symbol | |
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| ID | 5869827 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida GB-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010322 |
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| Strand | + |
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| Start bp | 2287671 |
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| End bp | 2289083 |
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| Gene Length | 1413 bp |
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| Protein Length | 470 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 641547163 |
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| Product | amino acid permease-associated region |
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| Protein accession | YP_001668275 |
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| Protein GI | 167033044 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG1113] Gamma-aminobutyrate permease and related permeases |
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| TIGRFAM ID | [TIGR01773] gamma-aminobutyrate permease |
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Plasmid Coverage information |
| Num covering plasmid clones | 30 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 35 |
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| Fosmid unclonability p-value | 0.948577 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGACGCAA CATCCACAAC CACCACCGCG AAAAGCGGGC ACGAGAGCAA GCTCAGTGCC
TCGCTGAAGT CGCGCCACCT GACGATGATG TCGATCGCCG GGGTTATTGG CGGCGCCTTG
TTCGTCGGTT CCGGCAGCGT GATCCACAGC GCCGGCCCAG CCGCTGTCCT GGCCTATCTG
GCAGGCGGCA TCCTGGTGGT GCTGATCATG CGCATGCTGG GTGAAATGGC GACTTCCTCG
CCAGACACCG GCTCGTTCTC CACCTACGCC GACCGCGCCA TTGGCCGTTG GGCCGGTTTC
ACCATCGGCT GGCTGTACTG GTGGTACTGG GTCATCCTCA TGGCCTGGGA AGCCTATGTG
GCGGGCAAGA TCCTGCATGG CTTCTTCCCT GACGTCAGCG TCAACGTGTT CGTGCTGGCC
ACGACCCTGC TGCTGATCAC CGTCAACTTC TTCAACGTCA AGCACTACGG TGAGTTCGAG
TTCTGGTTCG CCTTGATCAA GGTGATTGCG ATTGTCTGCT TCCTGATCGT GTGTACCGCT
GCCGTGATGA ACGTCTGGCA GTTCGGTGAG GTGCGTGGCA TCAGCCATCT CACCGCCGAA
GGCTTCATGC CCAATGGCAT CACCACCGTG ATCGGTGCCC TGCTCGGGGT GATGTTCGCC
TTCCTCGGCG CCGAAATCGT CACGATCGCG GCCTCCGAAG CCAAGGACCC TGCGGCGCAG
ATCGTCAAGG CGACCAACTC GGTGGTTTGG CGTGTGTGCC TGTTCTACGT CGGCTCGATC
TTCCTGATCG TCTGCCTGGT ACCGTGGAAC GACCCGCACC TGGGCGTCTC CGGCTACGGT
GCCTACCGCC GTACCCTGGA ACTGCTGGGC GTGCCGTATG CCGAACTGCT GATGAACTTC
GTGGTGCTGA CCTCGGTGAG CAGCTGCCTG ATCTCCGGCC ACTACACCGC CTCGCGCATG
CTGTTCTCCC TGGCCCAGCG TGGCGACGCG CCGTCGTTCT TCAAGATCAC CCGCGCCGGC
ACCGGTGTAC CGGTGTACGC GATCATGGGC TCGTGCGCCG TGGCCGTGGT GTGTGCGCTG
ATCAACTTCA GCGAGACCCT GCGCCCGAAA GACGTACTGG ACACCCTGAT GAACACCACT
GGCATGATCG CCCTGCTGGT GTACCTGGTC ATCGCCTTCT CGCAACTGCG CATGCGCCGC
AAGCTGATTG CCGAGGGCAA GGAAGTACGC CTGAAGATGT GGCTGTTCCC GTGGCTGACC
TACCTGGTGA TCGCGTTCAT CGTGGCCGCT CTGGTAACCA TGGCCTTCAT GCCTGACTAC
CAGATCCTGG TGATCTCTAC CGGCATCGCT GCGGCGATCG TGGTGGCGAT GGGTGTGGTG
CACCAGATCC GCTCTGGTAG CAAGCAGCAC TAA
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| Protein sequence | MDATSTTTTA KSGHESKLSA SLKSRHLTMM SIAGVIGGAL FVGSGSVIHS AGPAAVLAYL
AGGILVVLIM RMLGEMATSS PDTGSFSTYA DRAIGRWAGF TIGWLYWWYW VILMAWEAYV
AGKILHGFFP DVSVNVFVLA TTLLLITVNF FNVKHYGEFE FWFALIKVIA IVCFLIVCTA
AVMNVWQFGE VRGISHLTAE GFMPNGITTV IGALLGVMFA FLGAEIVTIA ASEAKDPAAQ
IVKATNSVVW RVCLFYVGSI FLIVCLVPWN DPHLGVSGYG AYRRTLELLG VPYAELLMNF
VVLTSVSSCL ISGHYTASRM LFSLAQRGDA PSFFKITRAG TGVPVYAIMG SCAVAVVCAL
INFSETLRPK DVLDTLMNTT GMIALLVYLV IAFSQLRMRR KLIAEGKEVR LKMWLFPWLT
YLVIAFIVAA LVTMAFMPDY QILVISTGIA AAIVVAMGVV HQIRSGSKQH
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