Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PputGB1_2008 |
Symbol | |
ID | 5869797 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida GB-1 |
Kingdom | Bacteria |
Replicon accession | NC_010322 |
Strand | - |
Start bp | 2258533 |
End bp | 2259273 |
Gene Length | 741 bp |
Protein Length | 246 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 641547133 |
Product | two component transcriptional regulator |
Protein accession | YP_001668245 |
Protein GI | 167033014 |
COG category | [K] Transcription [T] Signal transduction mechanisms |
COG ID | [COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 30 |
Plasmid unclonability p-value | 0.574198 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 46 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGAACACG TCGATCACAT CCTGATCGTC GACGACGACC GCGAAATCCG CGAACTGGTC GGCAACTACC TGAAGAAGAA CGGCCTGCGT ACCAGCATCG TCGCCGACGG CCGGCAGATG CGCGCCTTTC TCGAAGCCAA CAGCGTCGAC CTGATCGTGC TCGACATCAT GATGCCCGGC GACGATGGCC TGCTGCTGTG CCGTGAACTG CGTGCCGGCA AGCACCGCAA CACCCCGGTA TTGATGCTGA CCGCCCGCAA CGACGAAACC GACCGGATCA TCGGCCTGGA AATGGGCGCC GACGATTACC TGACCAAGCC GTTCTCGGCC CGCGAACTGC TCGCCCGTAT CAACGCCGTG CTACGCCGCA CGCGCATGCT GCCGCCCAAC CTGACCATCA GCGAAAGCAG CCGCCTGCTT GCTTTCGGCC AGTGGCGCCT GGACACCACC GCGCGCCACC TGCTCGACAG CGAAGGTACC CTGGTGGCCC TGAGCGGCGC CGAATACCGC CTGTTGCGGG TGTTCCTCGA CCACCCGCAG CGGGTGCTCA GCCGTGAACA ACTGCTTAAC CTGACCCAAG GCCGCGAGGC CGACATCTTT GACCGCTCCA TCGACTTGCT GGTCAGCCGC CTGCGCCAAC GCCTGGGCGA CGATGCCCGC GAGCCCAGCT GTATCAAGAC CGTGCGCAGC GAGGGCTATG TGTTCTCGCT GCCGGTGCAA TTGCTCGAGT CGCTGTCATG A
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Protein sequence | MEHVDHILIV DDDREIRELV GNYLKKNGLR TSIVADGRQM RAFLEANSVD LIVLDIMMPG DDGLLLCREL RAGKHRNTPV LMLTARNDET DRIIGLEMGA DDYLTKPFSA RELLARINAV LRRTRMLPPN LTISESSRLL AFGQWRLDTT ARHLLDSEGT LVALSGAEYR LLRVFLDHPQ RVLSREQLLN LTQGREADIF DRSIDLLVSR LRQRLGDDAR EPSCIKTVRS EGYVFSLPVQ LLESLS
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