| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_1935 |
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| Symbol | prpB |
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| ID | 5869724 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida GB-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010322 |
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| Strand | + |
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| Start bp | 2174441 |
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| End bp | 2175325 |
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| Gene Length | 885 bp |
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| Protein Length | 294 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 641547061 |
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| Product | 2-methylisocitrate lyase |
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| Protein accession | YP_001668174 |
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| Protein GI | 167032943 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG2513] PEP phosphonomutase and related enzymes |
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| TIGRFAM ID | [TIGR02317] methylisocitrate lyase |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 0.146073 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.00000021306 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | GTGAAGAGCA CCCCCGGTCA GCGTTTCCGC GATGCCGTTG CCGCTGAACA TCCGCTGCAG
GTGGTTGGCG CCATCAATGC CAACCATGCC CTGTTGGCCA AGCGTGCCGG CTTCAAGGCC
ATCTACCTGT CCGGTGGAGG CGTGGCCGCA GGCTCCCTGG GCCTGCCGGA CCTGGGCATC
AGTGGCCTGG ACGACGTGCT CACCGACGTG CGCCGTATCA CCGATGTCTG CGACGTGCCG
CTGTTGGTGG ATGTCGACAC TGGCTTCGGT GCCTCGGCCT TCAACGTTGC CCGTACCGTG
CGCTCGATGA GCAAGTTCGG CGCTGCCGCG ATCCATATCG AGGACCAGGT TGGCGCCAAG
CGTTGCGGCC ATCGCCCGAA CAAGGAAATT GTCACCCAGC AGGAAATGGT CGACCGCATC
AAGGCTGCCG TGGATGCCCG CAGCGATGAC AGCTTCGTGA TCATGGCGCG TACCGACGCG
TTGGCCGTCG AAGGCCTGAA CGCTGCCCTG GACCGTGCCG AGGCCTGCAT CGAGGCCGGC
GCCGACATGG TCTTCCCGGA AGCCATCACC GAACTGCAGA TGTACAAGAC TTTCGCCGAT
CGGGTGAAGG CACCGATTCT GGCCAACATC ACCGAGTTCG GCGCCACGCC GCTGTACACC
ACCGAAGAAC TGGCTTCGGT CGACGTGTCG CTGGTGCTGT ACCCACTGTC GGCGTTCCGC
GCCATGAACA AGGCGGCCGA GAACGTGTAC ACCGCGCTGC GTCGTGACGG CACGCAGAAA
AACGTGATCG ACACCATGCA AACCCGCATG GAGCTCTACG ATGCCATCGG CTATCACGCC
TTCGAGCAGA GCCTTGATGC GTTGTTTGCC CAGAAGAAGG GCTGA
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| Protein sequence | MKSTPGQRFR DAVAAEHPLQ VVGAINANHA LLAKRAGFKA IYLSGGGVAA GSLGLPDLGI
SGLDDVLTDV RRITDVCDVP LLVDVDTGFG ASAFNVARTV RSMSKFGAAA IHIEDQVGAK
RCGHRPNKEI VTQQEMVDRI KAAVDARSDD SFVIMARTDA LAVEGLNAAL DRAEACIEAG
ADMVFPEAIT ELQMYKTFAD RVKAPILANI TEFGATPLYT TEELASVDVS LVLYPLSAFR
AMNKAAENVY TALRRDGTQK NVIDTMQTRM ELYDAIGYHA FEQSLDALFA QKKG
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