Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PputGB1_1679 |
Symbol | |
ID | 5869459 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida GB-1 |
Kingdom | Bacteria |
Replicon accession | NC_010322 |
Strand | + |
Start bp | 1901346 |
End bp | 1903955 |
Gene Length | 2610 bp |
Protein Length | 869 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 641546796 |
Product | DNA topoisomerase I |
Protein accession | YP_001667918 |
Protein GI | 167032687 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0550] Topoisomerase IA [COG0551] Zn-finger domain associated with topoisomerase type I |
TIGRFAM ID | [TIGR01051] DNA topoisomerase I, bacterial |
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Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 29 |
Fosmid unclonability p-value | 0.229175 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGGCAAAT CGCTGGTCAT TGTGGAATCC CCGGCCAAGG CCAAGACCAT CAACAAGTAC CTGGGCAACC AGTACGTGGT GAAGTCGAGT ATCGGCCATA TCCGAGACCT CCCCACCAGC GGTTCGGCCA GCGCGAGCAA AGAGCCGGCC GCCAAGCGTG GCAAGGCCGC GGGTGAGGCT CCGGCCCTTT CGCCGAAAGA AAAAGCTCGT CGCCAGCTGG TAGCGCGCAT GGGTGTCGAC CCCGACCATG GCTGGAAGGC GAAGTACGAA ATCCTGCCTG GCAAGGAAAA GGTGATCGAA GAACTGCGCC GCCTGGCCAA GGATGCCGAC ACCATCTATC TCGCAACCGA CTTGGATCGT GAGGGGGAAG CCATTGCCTG GCACCTGCGC GAGGCCATCG GCGGCGACGA CACCCGCTAC AAGCGCGTGG TGTTCAACGA AATTACCAAG AAGGCCATTC AGGAGGCCTT CTCGCAGCCG GGCGAGCTGG ACATCGACCG GGTCAACGCC CAGCAGGCGC GGCGCTTCCT TGACCGCGTG GTCGGTTACA TGGTCTCGCC ACTGCTGTGG GCCAAGATTG CCCGTGGCCT GTCCGCTGGC CGTGTGCAGT CGGTAGCGGT CAAGCTGGTG GTGGAGCGCG AGCGTGAAAT CCGCGCGTTC ATCCCGGAAG AGTACTGGGA GATCCACGCC GACCTCGGCA CCGCGAAGAA CGCCAAGGTG CGTTTTGAGG TGGCGCGCGA GAAGGGCGAG GCCTTCAAGC CGCTGAACGA AGCCCAGGCC ATGGCTGCGC TAGAGAAGCT GAAGGCTTCC AGCTACAGCG TGGTCAAGCG TGAAGATCGC CCGACCAGCA GCAAACCGTC GGCGCCGTTC ATTACTTCGA CCCTGCAGCA GGCAGCCAGT AACCGCCTGG GCTTTGGGGT AAAGAAAACC ATGATGATGG CCCAGCGCTT GTACGAAGCC GGCTACATCA CTTACATGCG TACCGACTCG ACCAACCTGT CGGCTGATGC CCTGGACATG GCGCGCAGCT ACATCGAGCG TGAATTCGGC AAGCAGTACC TGCCGGAAGC GCCGCTGGTA TACGGCAGCA AGGAAGGCGC CCAGGAGGCG CACGAAGCGA TTCGTCCTTC TGACGTGAAT ACCCACCCGA CCAAGCTCAG TGGCATGGAG CGTGACGCCG AGCGCCTGTA CGAGCTGATC TGGCGCCAGT TCCTGGCATG CCAGATGCCG CCTGCGCAGT ACCTGTCCAC CAGCGTTACC GTGGCTGCCG GTGATTTCGA GCTGCGTGCC AAGGGTCGTA TCCTCAAGTT CGACGGTTAC ACCCGTGTGC TGCCACAGCA GAGCAAGCCG GGCGAAGACG ACGTGCTGCC AGAAATGGTT CAGGGTGAAG CGCTAAAGCT GATCCAGATC GACCCGAGCC AGCACTTCAC CAAGCCACCG GCGCGCTTCA CCGAAGCCAG CCTGGTCAAG GAAATGGAAA AGCGCGGCAT CGGCCGCCCA TCGACCTACG CGGCGATCAT TTCCACCATT CAGGACCGTG GCTATGTGAC CCTGCACAAC CGCCGCTTCT ACTCCGAGAA GATGGGCGAT ATCGTCACCG AGCGCCTGTC GGAGAGCTTC TCCAACCTGA TGGACTATGG CTTTACCGCC GACATGGAAG AGAACCTCGA CGACGTGGCC CAGGGCGAGC GTGACTGGAA GAACGTGCTC GACGAGTTCT ACGGCGACTT CAGCAAGAAG CTGCAGACTG CCGAGTCCAG CGAAGACGGC ATGCGCGCCA ACCAGCCGAC CATGACCAAC ATTCCGTGCA AGGAATGTGG CCGGCCAATG ATGATCCGCA CCGCGTCCAC CGGTGTGTTC CTGGGTTGCT CGGGTTACAC CTTGCCGCCA AAAGAGCGCT GCAAGGCCAC CGTCAACCTG GTGCCGGGCG ACGAAATTGC CGCTGATGAC GAGGGCGAAT CGGAGTCGCG CGTGCTGCTG GGCAAGCACC GTTGCCCGAT CTGCGCCACG GCGATGGACG CTTACCTGCT GGATGAGAAG CACAAGCTGC ACATCTGCGG TAACAACCCC GATTGCGTTG GCTATGAGAT CGAAGAGGGC AGCTACCGCA TCAAGGGTTA CGAAGGGCCT AGCCTGGAGT GCGACAAGTG CGGCAGCGAG ATGCAATTGA AGACCGGTCG TTTCGGCAAG TTCTTCGGCT GCACCAACCC GGCATGCAAG AACACCCGTA AGCTGCTCAA GAGTGGCGAG GCGGCACCAC CGAAGATGGA CAAGGTGGAC ATGCCGGAGC TCAAGTGCGA GAAGGTCGAC GACACCTATG TGCTGCGCGA CGGTGCTTCG GGGTTGTTCC TGGCTGCCAG CCAGTTCCCT AAAAACCGCG AAACCCGCGC GCCGCTGGTG CTCGAGATCG TGCCGCACAA GCATGAGATC GACCCGAAGT ACCACTTCCT GTGCGATGCG CCGCAGAAAG ACCCAGATGG CCGCCCGGCG GTAATTCGCT ACAGCCGCAA GACCAAGGAG CAGTACGTGC AGTCCGAGGT CGATGGCAAG CCGACCGGCT GGAAGGCGTT CTACGACGGT AATGCGTGGA AGGTTGAAGA CAAGCGCTGA
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Protein sequence | MGKSLVIVES PAKAKTINKY LGNQYVVKSS IGHIRDLPTS GSASASKEPA AKRGKAAGEA PALSPKEKAR RQLVARMGVD PDHGWKAKYE ILPGKEKVIE ELRRLAKDAD TIYLATDLDR EGEAIAWHLR EAIGGDDTRY KRVVFNEITK KAIQEAFSQP GELDIDRVNA QQARRFLDRV VGYMVSPLLW AKIARGLSAG RVQSVAVKLV VEREREIRAF IPEEYWEIHA DLGTAKNAKV RFEVAREKGE AFKPLNEAQA MAALEKLKAS SYSVVKREDR PTSSKPSAPF ITSTLQQAAS NRLGFGVKKT MMMAQRLYEA GYITYMRTDS TNLSADALDM ARSYIEREFG KQYLPEAPLV YGSKEGAQEA HEAIRPSDVN THPTKLSGME RDAERLYELI WRQFLACQMP PAQYLSTSVT VAAGDFELRA KGRILKFDGY TRVLPQQSKP GEDDVLPEMV QGEALKLIQI DPSQHFTKPP ARFTEASLVK EMEKRGIGRP STYAAIISTI QDRGYVTLHN RRFYSEKMGD IVTERLSESF SNLMDYGFTA DMEENLDDVA QGERDWKNVL DEFYGDFSKK LQTAESSEDG MRANQPTMTN IPCKECGRPM MIRTASTGVF LGCSGYTLPP KERCKATVNL VPGDEIAADD EGESESRVLL GKHRCPICAT AMDAYLLDEK HKLHICGNNP DCVGYEIEEG SYRIKGYEGP SLECDKCGSE MQLKTGRFGK FFGCTNPACK NTRKLLKSGE AAPPKMDKVD MPELKCEKVD DTYVLRDGAS GLFLAASQFP KNRETRAPLV LEIVPHKHEI DPKYHFLCDA PQKDPDGRPA VIRYSRKTKE QYVQSEVDGK PTGWKAFYDG NAWKVEDKR
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