| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_1640 |
|---|
| Symbol | |
|---|
| ID | 5869419 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida GB-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010322 |
|---|
| Strand | - |
|---|
| Start bp | 1854461 |
|---|
| End bp | 1856713 |
|---|
| Gene Length | 2253 bp |
|---|
| Protein Length | 750 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 641546756 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001667879 |
|---|
| Protein GI | 167032648 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 0.885259 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 40 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCATGAAA TCATTCCAGA TCTTTTCGAT CGCTATAAGC TGTTGGGCTA TGAGTTTAAC
GGCAGCAATC CATACCAACA AGCTCTGGAA CTGAGAGACC ACTTATTCTC ATCAATGCCG
GCAGGAAGCC CGATCACCAA ACCTTATTGG TTTGCTCCAG GCACCGAGTT CAATCATGCA
CAATGGAGAC TGTTGATTGA GACCAAGAAA GGGCCCTCCC TCAAAAGAAC AATCGACTTT
GACATTAAAC TCTACGATGG CTCTAATTTA CTTGACCCAA AGAACGAAAA CTTACTCAAT
ACGATCCGCC TGCTGATTGC GTATCGTGTT CACAATCGGT TTACAGGTGG CCAAGTATTC
GCACCAGAAT ACGCATATCA AACACTAACA AGGACGCTCC AAATAGCTGA CTGGATGCTC
CTTAACGGCG AGCGCTTCCG AATTTGCGAG CAAGGGCTTT CTCAATTGAG CGCAAATAGC
ATCTATCATC TACTGAATGA AATAACCATT CTGCCTACAA GCGAAGCAGT GTATAACTAT
TCGTCAAAAT TGACCGACTG GATCAGACAA CACCTGCATT TGGTCAGCGA ACACGAGATT
GCTGAGGCCG CCAGTGATAA CGACTTCATT CTCGACTTTG AGACCGTTGA TCGAGAACTT
AATCTAACGG ACCACGAACT GATCAGATCA CGCGTCCTTT TTCTAAAACT TGGCTATTAT
GAAAAAGTTA ACGGATCTCT GCTTTTGCGA CCCCAGCCAA TACTGAATGA AATATATTCA
GGAACATTGA ACGGAAAGTC CATTAGGCCG CTTCATTTTG GCGAACTGAA TATCGGCGAG
TCGTCATATG ACGCAGAATA CCCATCTGTT GAAGTAAAGC GCAATGAAAA GGAAGGCCCA
TCTCATAGAA CATTGAACAG CTACATCCAA ACATTCAGAA CACTTTCCAT AATCGAGGAA
TGCGAAACCG GCGCCGATAA CAATATGCTT CAAAGCCTCA CATTACAGCG CGTTATCGCG
GGAAAAGAGT TTATGCAGCC CATGCGCTAC AGAACTGCTC CGATTGAAGT AACGCTGCAA
GCGATTAGGT GCAGCTTGGA ATTTCTATTC GAAAATACTG ACTGGGTACT TGATGCTGTT
TATAGGGTTA TCGAAGCTAA ATCCAATCAG ACGATGGACT CAATTAGCCT TAACGATTTC
GTGCTGGGCA TGACGCCAAA GCATCCTATC GCATGCGGAA TTCGCTATTG GTCAGTACAA
CGTTCGAACC CCGAGTTTTA CAACCTCCTG CGGGCGAATT CAACGCTTGC TGAGCTGTAT
CAAGTATTGA TCGGCTCTGT ACAAATTGTA ACCGGCGCAG TGATGGCTAG GCGCCGAGAT
GAAATTACCT ATCTGGACAG CAAAATCTGC TTGGAGCCGC GAACAGATCC CTCTCTCCCC
GAAAATGCTA ATACTCACTA CTACCTGGTA TTCGATGCAG CGAAACTCGG CGCAGCAGGT
CGGCGAGAAC AGTTGAAGCG ACCTCTCCCC CGAGTGGTAG CTTTATTTAT TTGGAAACTA
AAGGAATTTA ACCGCCGAGT GGACGCGGTG ATAACCAATA AAGTCAGTAC GCTCTTCAGG
GGCATAAGCA GAATCAATGC CGCTGTCACC GAGGGCGGAC GTTTCACCCA TTACAACACA
GTGAACCTTG CATGCGATTA CTTCCAACTC CCCACCATCA TGGATGACGG AGTGGAGAAA
CGCTATTACA TCCGGCAGCA TCAACTTCGC CGCTTTTATG CTATCGCCTT CTTTTGGGGT
ACTGATAATC CTGAGTTTGA AACACTTAGC TATATGCTCG GGCACTCAGA TGCCAAGCTT
TTTTACCACT ACGTCACTGA ACACGTGACG GGACGCATTC TACAGGAAGC CAAGGCGAAC
CGAATTCAAG CAAGTCTCAA AGCAGGTAGG CGAGACATCG AGGGTCTGGA CGAGCTAATC
CAAAAGCTTC GTAAAGATTT CAATACTAAG CAGATCCACA TCAAAACATA CAATGAGGTT
TTTAACAGCC TTACCCCTAT GCACGAAGAC AAGCTTATTG AAACCCAACC TGGCTTCGAT
GAATACCTCT CGACTTACAC ATGCGAAGGC CAGATCCTTG ACTATCTTAC AGATGGAAAA
ATCACTCTTG AACCAGATTT CTTTGAGGTG GTAGGAGCAG ACGGCCAGGT GATTTCGAAG
TTCAACTTAG TATTGAAAGT AAAGGACATT TAA
|
|---|
| Protein sequence | MHEIIPDLFD RYKLLGYEFN GSNPYQQALE LRDHLFSSMP AGSPITKPYW FAPGTEFNHA
QWRLLIETKK GPSLKRTIDF DIKLYDGSNL LDPKNENLLN TIRLLIAYRV HNRFTGGQVF
APEYAYQTLT RTLQIADWML LNGERFRICE QGLSQLSANS IYHLLNEITI LPTSEAVYNY
SSKLTDWIRQ HLHLVSEHEI AEAASDNDFI LDFETVDREL NLTDHELIRS RVLFLKLGYY
EKVNGSLLLR PQPILNEIYS GTLNGKSIRP LHFGELNIGE SSYDAEYPSV EVKRNEKEGP
SHRTLNSYIQ TFRTLSIIEE CETGADNNML QSLTLQRVIA GKEFMQPMRY RTAPIEVTLQ
AIRCSLEFLF ENTDWVLDAV YRVIEAKSNQ TMDSISLNDF VLGMTPKHPI ACGIRYWSVQ
RSNPEFYNLL RANSTLAELY QVLIGSVQIV TGAVMARRRD EITYLDSKIC LEPRTDPSLP
ENANTHYYLV FDAAKLGAAG RREQLKRPLP RVVALFIWKL KEFNRRVDAV ITNKVSTLFR
GISRINAAVT EGGRFTHYNT VNLACDYFQL PTIMDDGVEK RYYIRQHQLR RFYAIAFFWG
TDNPEFETLS YMLGHSDAKL FYHYVTEHVT GRILQEAKAN RIQASLKAGR RDIEGLDELI
QKLRKDFNTK QIHIKTYNEV FNSLTPMHED KLIETQPGFD EYLSTYTCEG QILDYLTDGK
ITLEPDFFEV VGADGQVISK FNLVLKVKDI
|
|---|
| |