| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_1609 |
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| Symbol | |
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| ID | 5869389 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida GB-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010322 |
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| Strand | + |
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| Start bp | 1817598 |
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| End bp | 1819988 |
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| Gene Length | 2391 bp |
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| Protein Length | 796 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 641546727 |
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| Product | diguanylate cyclase with PAS/PAC sensor |
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| Protein accession | YP_001667850 |
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| Protein GI | 167032619 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 29 |
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| Fosmid unclonability p-value | 0.248445 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCAAAGT ATGGCGTGCG TGCGCGGTTG CTTGGCCTGT GCACAGAGGC GGTGTCCGCC
TGGGCGGTGG CACTGGTGGC CTTGGTGGCG GGCGGCCTGT TGACGGCCGC CCTGGCGCTT
GCCGCGCAGA CGTTCTACAA GCAGCAGTTG CGCCAGCGTT TCGAGTTGCT GGCCAGCGAA
CGCTCCAGCC GCATTGCCGA GCGCTTCGAT GAACAAGAGC AACGCCTGGA CGGCCTGCGG
CGTTTCTTCA GTTTTTCCAA CGAAGTTACC CCGCACGAAT TTGACGGTTA CGCCCGGCCG
TTGCTGCAGC GCACCCTGGC CTACGCTTGG GCACCACGCG TCGAAGCCGC GCAGCGCGCC
GAGTTCGAGC GTCACGCCAG TGAGCACTCG GGCCCAGGCT ATGTGATCCG AGACCAGGAC
GCACAAGGCC AGTGGCGCCT CGCGCCGCCG CGCGACCATT ACTTTCCGGT GCTGTATACC
CAATCCGGTG AAATGCCGGG GCTGCCCTAT GGGCTGGACC TTGCCGGACA GGGGGCACCC
CAGGCAGCAC TGGCGCGGGC GCTCGGGCCT GGCAGCATGG CCGTGTCCGA ACCCTTGGCC
CTGTACGATA TCCCTTCGTA CGCGCGCGGC CTGCTGATGG TGGCGCCGGT GTTTTCCGAT
GCCAACCCCC ACGGCGCGGC AGCAGGTTAT GTGATGGCCT TGCTGAGCAT GCGCGAGCTG
GTCAGCGACG CTCGACCGGT AGCGGCCGAT GACAACCTGG TCGTGCGCAT CACCGACCCG
TCTGGGTTGC AAGGCCCCGA AGTGATGTTC GATTCGCAGA ACCCGGTCGC CTCCCTGGCG
CTGGCCAGCA ACCAGGTACT GCACCTGGCC GATCACCATT TCCAGCTGAG CATTTTGCCG
AGCCAGGCGT TCGTGCAGGC CAACCGTTCC TCGGCGGTGC TGGCGGTGAG TTTGTTGGGC
GGGTTGTTGA GCCTGCTGCT CAGCGTGCTG CTCTATAGCC TGTTCAGCCA GCGTCAGCGC
GCCCTGGCCT TGGTCGAGCA GCGAACTGCC GAGTTGCAGG TCAGCGAGCA GTCGTTGCGC
GGCACCCACA ACCAGCTGCG CAGTGTGCTG GATGCCGCAA CCCAGGTGGC GATCATCGCC
ACCAACCTCA AGGGGATTAT CAGCACCTTC AATGCCGGTG CTGAACGCAT GCTCGGTTAC
CCGGCCAGCG AAGCGATCGG GCAGTTGCGC CTTGAGGATT TGGTGCTGCC CGAGGAGCTG
AACCTGCGTG CCCATGCGTT GAGCTTGCGC TTTGGTCGCC CGATTGCTGG CGGCCAGGCA
ATGTTCGCCG AAACGGTGCA GGAGCACGGC GCAGAGCCCG GTGAGTGGAC CTTGCTACGT
GCCGATGGCA GCCAGCTGTT GGCCAACATG CTGGTTACCG CCATGCTCGA CGAGCAGGGT
TTGTGGGTTG GCTACCTGGC CATCTGTATT GATGTCACCG AGCGGCGTCG GGTGCATGAG
GCGCTGGCGG CGCGTGACCG GTTGCTGGAA AAGCTCAGCG CCGAGGTGCC AGGCGGCATC
TACCAATACC GCCTGGATGC CAACGGCCAT TCGTGCTTCC CGTATGCCAG CATGGGCCTG
TATGACATCT ACGAGGTTGA TCTGCAGCAG TTGCGCGAGG ATGCCACGGT GGTGTTCGAG
CGCATCCACC CCGATGACCT GGAGCGTGTG CGCCGTTCGG TGCGCTACTC GGCCGAACAC
CTGTCACCCT GGCGCGAGGA GTATCGGGTC TGCCTGCCTC GGGCCGGATT GCGCTGGGTG
CGTGGTGAGG CGACGCCGGA AGTGGGTGAG CAGGGCTGTA CCTTGTGGCA TGGCTACCTG
ACGGACATTT CCGACCTCAA GGGTGTGGAA GAAGAGCTGC GGGCGCTGTC GGTTACCGAT
TCGCTGACCG GCATCCACAA CCGCCGTTAC TTTCAGGAGC GGCTCAAGGT CGAACTGGAG
CGGGCCCAGC GCGATGGCCT GGCGCTGGCG GTGATCATGC TCGACATCGA TCACTTCAAG
CGCATCAACG ACCGTTTCGG CCATGCGGTC GGCGATCGGG TGTTGCGTAG CCTGTGCCAG
CGCATCGGCC AACGTTTGCG GCGTACCGAT GTGTTCTGCC GCTTGGGCGG GGAGGAATTC
ATGGTGCTGT GCCCGGGCAG CGATGCCGAG CAGGCGCGGC TGCTGGCGCT CGAGCTGTGG
CAAGGCGTAC GCAATATGCC GGTGGAGGGC GTGGGCAGGG TAACCGCGAG TTTTGGGGTG
GCGGGATGGC GACCAGAGGA GGGTGCCGAT GCCTTGCTGT TGCGTGCCGA TGCAGGGGTG
TATGCGGCCA AGCAGGCCGG GCGGGACCGG GTGGAAGGGG AGTCGGCCTG A
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| Protein sequence | MSKYGVRARL LGLCTEAVSA WAVALVALVA GGLLTAALAL AAQTFYKQQL RQRFELLASE
RSSRIAERFD EQEQRLDGLR RFFSFSNEVT PHEFDGYARP LLQRTLAYAW APRVEAAQRA
EFERHASEHS GPGYVIRDQD AQGQWRLAPP RDHYFPVLYT QSGEMPGLPY GLDLAGQGAP
QAALARALGP GSMAVSEPLA LYDIPSYARG LLMVAPVFSD ANPHGAAAGY VMALLSMREL
VSDARPVAAD DNLVVRITDP SGLQGPEVMF DSQNPVASLA LASNQVLHLA DHHFQLSILP
SQAFVQANRS SAVLAVSLLG GLLSLLLSVL LYSLFSQRQR ALALVEQRTA ELQVSEQSLR
GTHNQLRSVL DAATQVAIIA TNLKGIISTF NAGAERMLGY PASEAIGQLR LEDLVLPEEL
NLRAHALSLR FGRPIAGGQA MFAETVQEHG AEPGEWTLLR ADGSQLLANM LVTAMLDEQG
LWVGYLAICI DVTERRRVHE ALAARDRLLE KLSAEVPGGI YQYRLDANGH SCFPYASMGL
YDIYEVDLQQ LREDATVVFE RIHPDDLERV RRSVRYSAEH LSPWREEYRV CLPRAGLRWV
RGEATPEVGE QGCTLWHGYL TDISDLKGVE EELRALSVTD SLTGIHNRRY FQERLKVELE
RAQRDGLALA VIMLDIDHFK RINDRFGHAV GDRVLRSLCQ RIGQRLRRTD VFCRLGGEEF
MVLCPGSDAE QARLLALELW QGVRNMPVEG VGRVTASFGV AGWRPEEGAD ALLLRADAGV
YAAKQAGRDR VEGESA
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