Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PputGB1_1553 |
Symbol | |
ID | 5869333 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida GB-1 |
Kingdom | Bacteria |
Replicon accession | NC_010322 |
Strand | + |
Start bp | 1747890 |
End bp | 1749032 |
Gene Length | 1143 bp |
Protein Length | 380 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 641546671 |
Product | hypothetical protein |
Protein accession | YP_001667794 |
Protein GI | 167032563 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG2706] 3-carboxymuconate cyclase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 43 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 33 |
Fosmid unclonability p-value | 0.574544 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAGACCA AGATGAACCG GACCTGGACG AGCCTGCTGA CCGCTAGCCT GATGAGCCTG ACAATCAATG CCCACGCCGC CACCTTGCTG GTGGGCAGCT ACACCGATGG CGCCAGCCAG GGTATCTACC GCTACCAGTT CGATGAAAAG GCCGGCCACA TCGACCCCAC ACCGCAACAA GTGGTGAAGA GCGTCAGCCC TTCATGGCTG GTGCTGTCGG CCGACCAGCG CCTGCTGTTC GCGGTCAATG AAACCCAGGG TGGGCATGCC AGTAGTTTCA GCGTCAGTGC CAAGGGTGAG ATCAAGCTGC TCAACCAGGT GGCCACCCAA GGTGACGAAC CGACTCACGC CAGCCTCAGC CGTGACCAGC GTTACCTGTT TGTGGCCAAC TACGCGGTCA AGCCCGACCC CGGCGGCAGC CTGGTGGTGA TCCCGGTGGC CAAGGACGGC AAGCTCAAGG CCGTGGTGCA ACAGGCCCGG CACAAGGCAA GTGGGGTCAA CCCCGAGCGT CAGGCCGGTG CCCACGTGCA TTCACTGGTG CTGTCGCCCG ATGGCCAGCA TGTGTATGCC TGCGACCTGG GTGCAGACAA GGTGTTCATC TACCGCTACG ACGGTGCCAG TGTGGACAAG CCGTTGAGCC CGGCAATCCC GGCCTCGGTG GACTTGCCGC CAGGTAGCGG GCCGCGTCAC CTGCTGTTTG ACGCCAAGGG CCGGCATGCC TACCTGACGC TGGAAATGAG TGGCGAAGTG GTGATGTTCG ATGTCAAGGA CGATGCCTTG CTCGAGCGCC AGCGCTTGCC GCTGGCCGAA CAGCAGGACC CTGCGGCCAA GGCGGCGGGA GGCTTGCACC TGTCGGCGGA TGGGCGCTTC CTGTACGTGA GCAATCGCGG AACGGCCAAC GAAATCGTTG TGTTCAGTGT GGGCAAGGAC GATGGCCAGT TGGCGTTTCT GCAACGTCGC TCGGTGGAAG GTGATCATCC CCGTGAGTTT GCCCTGGACC CCAGTGACAA CTTCCTGCTG GTGGCCAACC AGAAGAGCAA CCAGATCGTG GTGATGCGCC GCGATCCGCG CAGTGGCAAG CTGCTGGAGA CGGTGCAGAC ACTGAAGCAG GAAGCACCTT CGGACCTGAA GTTCATCGAG TGA
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Protein sequence | MKTKMNRTWT SLLTASLMSL TINAHAATLL VGSYTDGASQ GIYRYQFDEK AGHIDPTPQQ VVKSVSPSWL VLSADQRLLF AVNETQGGHA SSFSVSAKGE IKLLNQVATQ GDEPTHASLS RDQRYLFVAN YAVKPDPGGS LVVIPVAKDG KLKAVVQQAR HKASGVNPER QAGAHVHSLV LSPDGQHVYA CDLGADKVFI YRYDGASVDK PLSPAIPASV DLPPGSGPRH LLFDAKGRHA YLTLEMSGEV VMFDVKDDAL LERQRLPLAE QQDPAAKAAG GLHLSADGRF LYVSNRGTAN EIVVFSVGKD DGQLAFLQRR SVEGDHPREF ALDPSDNFLL VANQKSNQIV VMRRDPRSGK LLETVQTLKQ EAPSDLKFIE
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