Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PputGB1_1535 |
Symbol | |
ID | 5869311 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida GB-1 |
Kingdom | Bacteria |
Replicon accession | NC_010322 |
Strand | + |
Start bp | 1726393 |
End bp | 1727604 |
Gene Length | 1212 bp |
Protein Length | 403 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 641546649 |
Product | O-succinylhomoserine sulfhydrylase |
Protein accession | YP_001667776 |
Protein GI | 167032545 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0626] Cystathionine beta-lyases/cystathionine gamma-synthases |
TIGRFAM ID | [TIGR01325] O-succinylhomoserine sulfhydrylase |
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Plasmid Coverage information |
Num covering plasmid clones | 37 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 33 |
Fosmid unclonability p-value | 0.47488 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACGGATC AATGGGATGC CGGGCGACTG GACAGTGACC TCGAGGGTGT CGGTTTCGAC ACCCTGGCGG TGCGCGCCGG TCAAAACCGT ACACCGGAAG GCGAACACAG CGAAGCGCTG TTCCTGACCT CCAGCTATGT GTTCCGCACA GCGGCTGATG CTGCTGCGCG CTTTGCCGGC GAAACGCCGG GCAACGTCTA CTCGCGCTAC ACCAACCCCT CAGTGCGTGC CTTCGAGGAG CGCCTGGCTG CAATGGAAGG CGCGGAGCAG GCCGTGGGTA CGTCCACCGG TATGGCGGCA ATCCTGGCAG TGGTCATGTC GCTGTGCAGC GCCGGTGACC ATGTACTGGT GTCGCAGAGC GTGTTTGGCT CCACCATCAG CCTGTTCGAG AAGTACTTCA AGCGCTTTGG CGTACAAGTG GACTACGTGC CACTGGTCGA CCTCAATGGC TGGGAGAAGG CCATCAAGGC CAACACCAAG CTGCTGATCG TCGAATCGCC GTCCAACCCG CTGGCCGAGC TGGTCGATAT CACCGCGCTC AGTGAAATCG CTCATGCCCA TGGCGCCATG CTGGTAGTGG ACAACTGCTT CAGCACCCCG GCGCTGCAGC AGCCGCTGAA ACTGGGTGCC GATATCGTGT TCCACTCGGC CACCAAGTTC ATCGACGGCC AGGGCCGCTG CATGGGCGGT GTGGTCGCTG GCCGTGCCGA GCAGATGAAA GAAGTGGTCG GTTTCCTGCG TACCGCAGGC CCGACGCTCA GCCCGTTCAA CGCCTGGATC TTCACCAAGG GCCTGGAAAC GTTGCGCCTG CGCATGCGTG CGCACTGCGA AAGCGCCCAG GCCCTGGCCG AATGGCTGGA GCAGCAGGAA GGCGTGGAAA AGGTGCATTA CGCAGGCCTG CCGAGCCACC CGCAGCACGA ACTGGCCAAG CGCCAGATGA GCGGTTTTGG TGCGGTGGTC AGCTTTGAAG TCAAAGGCGG TAAAGAGGGT GCCTGGCGCT TCATCGATGC CACCCGGGTG ATTTCCATCA CCACCAACCT GGGTGACAGC AAAACTACCA TCGCGCACCC GGCCACCACC TCCCATGGTC GCCTGTCGCC GCAGGAGCGT GAAGCTGCGG GTATCCGCGA CAGCCTGATC CGTGTTGCCG TAGGCCTGGA AGACGTGGCC GACCTGCAAG CCGACCTGGC GCGCGGGCTG GCTGCACTGT GA
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Protein sequence | MTDQWDAGRL DSDLEGVGFD TLAVRAGQNR TPEGEHSEAL FLTSSYVFRT AADAAARFAG ETPGNVYSRY TNPSVRAFEE RLAAMEGAEQ AVGTSTGMAA ILAVVMSLCS AGDHVLVSQS VFGSTISLFE KYFKRFGVQV DYVPLVDLNG WEKAIKANTK LLIVESPSNP LAELVDITAL SEIAHAHGAM LVVDNCFSTP ALQQPLKLGA DIVFHSATKF IDGQGRCMGG VVAGRAEQMK EVVGFLRTAG PTLSPFNAWI FTKGLETLRL RMRAHCESAQ ALAEWLEQQE GVEKVHYAGL PSHPQHELAK RQMSGFGAVV SFEVKGGKEG AWRFIDATRV ISITTNLGDS KTTIAHPATT SHGRLSPQER EAAGIRDSLI RVAVGLEDVA DLQADLARGL AAL
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