Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PputGB1_1507 |
Symbol | |
ID | 5869277 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida GB-1 |
Kingdom | Bacteria |
Replicon accession | NC_010322 |
Strand | - |
Start bp | 1690932 |
End bp | 1691987 |
Gene Length | 1056 bp |
Protein Length | 351 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 641546615 |
Product | secretion protein HlyD family protein |
Protein accession | YP_001667748 |
Protein GI | 167032517 |
COG category | [V] Defense mechanisms |
COG ID | [COG1566] Multidrug resistance efflux pump |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 24 |
Plasmid unclonability p-value | 0.194742 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 43 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCCTGCTC AACTCAAACG CCGCCTGGCG ATCTTCTTTA CTCTGGTGGC CATCATCGCC CTCGCCTTCC TGGCCCACTG GTACTTCAAG GGCCGCTTCT ACGAGAGCAC CGACAATGCC TATGTGCAGG GCGAGATCAC CCGTATCTCC AGCCAGCTTG GCGCACGTAT CGACACTGTG CCGGTCGAGG ACAACCAGCA CGTCAACAAG GGCGACCTGC TGGTGCGCCT GGAAGCCGCC GACTTCGAAC TGGCTGTCGA GCGCGCACAC GCCGCCTTGG CCACCCGCGA AGCCGAGTAC GCGCAGGCAC AGAGCCGCCT GACCCAACAA GGTAGCCTGA TTGCCGCTGG CCAGGCTCAG GTGGCGGCCA ACCAGGCCAC GTTCGACCGC TCACGCCTGG ACCTGAGCCG CGCCGAGAAG TTGCGCAAGC CGGGTTATGT CTCCGAAGAG CGGGTCACCA CCCTGTCGGC GGACAGCCAT GTTGCCGGCT CCCAGGTCGA CAAGGCCCGG GCCGACTTGC AGAGCCAGCG CCAGCAGGTC AACGCCCTGA ACGCCGACCT GAAACGCCTG GATGCGCAAA TTGCCAACGC CCGCGCCGAC CTGGCCCAGG CCGAGCTGAA CCTGACCCGC TGCGAAATCC GCGCGCCCAT CAGCGGTACC ATCGGCCAGC GCAATGCGCG CAATGGCCAG GTGGTACAGG CCGGCGCTTA CCTGCTGTCG ATCGTGCCGG ACGAAGATAT CTGGGTGCAG GCCAACTTCA AGGAAACCCA GATTGGCCAC ATGCAGCCTG GCCAGCGTGC CGAGCTGTTG TTCGACAGCT ACCCCGACAC CCCCATCGAA GGGCGGGTGG ACAGCCTGTT CGCCGCCTCG GGCGCGCAGT TCAGCCTGCT GCCGCCAGAC AACGCCACCG GCAACTTCAC CAAGGTGGTG CAGCGTATCC CGGTAAAACT CACCTTCAGC GCCGACAACC CGTTGCACGG GCGTATCCGC CCTGGCATGT CGGTCACCGC CACCGTCGAC TTGCGCCGCG AAGACGAAGG CCAACATGGC CGGTGA
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Protein sequence | MPAQLKRRLA IFFTLVAIIA LAFLAHWYFK GRFYESTDNA YVQGEITRIS SQLGARIDTV PVEDNQHVNK GDLLVRLEAA DFELAVERAH AALATREAEY AQAQSRLTQQ GSLIAAGQAQ VAANQATFDR SRLDLSRAEK LRKPGYVSEE RVTTLSADSH VAGSQVDKAR ADLQSQRQQV NALNADLKRL DAQIANARAD LAQAELNLTR CEIRAPISGT IGQRNARNGQ VVQAGAYLLS IVPDEDIWVQ ANFKETQIGH MQPGQRAELL FDSYPDTPIE GRVDSLFAAS GAQFSLLPPD NATGNFTKVV QRIPVKLTFS ADNPLHGRIR PGMSVTATVD LRREDEGQHG R
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