Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PputGB1_1506 |
Symbol | |
ID | 5869276 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida GB-1 |
Kingdom | Bacteria |
Replicon accession | NC_010322 |
Strand | - |
Start bp | 1689392 |
End bp | 1690942 |
Gene Length | 1551 bp |
Protein Length | 516 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 641546614 |
Product | EmrB/QacA family drug resistance transporter |
Protein accession | YP_001667747 |
Protein GI | 167032516 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG2814] Arabinose efflux permease |
TIGRFAM ID | [TIGR00711] drug resistance transporter, EmrB/QacA subfamily |
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Plasmid Coverage information |
Num covering plasmid clones | 27 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 45 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCCGGTG ATACGTTGCT CCGCCCCACT GCGGAGCCGA CTCGGCGCGA CTGGATCGCA GTGATGAGCG TGATGCTCGG TGCCTTCATG GCGGTGCTGG ACATCCAGAT CACCAACTCC TCGTTGAAGG ACATTCAGGG CGCATTGTCA GCGACGCTGG AAGAAGGCTC ATGGATTTCC ACTTCGTACC TGGTGGCGGA AATCATCATG ATCCCGCTGA CGGCCTGGCT GGTACAGCTG CTGTCGGCGC GGCGCCTGGC CGTGTGGGTA TCGGGCGGCT TCCTGCTGTC GTCGCTGCTG TGCTCGATGG CCTGGAACCT GGAGAGCATG ATCCTGTTTC GCGCCTTGCA GGGTTTCACC GGCGGCGCGC TGATTCCGCT GGCATTTACC CTGACACTGA TCAAGCTGCC CGAGCACCAC CGCGCCAAGG GCATGGCGAT GTTCGCCATG ACCGCCACTT TCGCGCCCTC CATCGGCCCC ACCCTGGGCG GCTGGCTGAC CGAGAATTGG GGCTGGGAGT ACATCTTCTA CATCAACATC CCACCAGGCC TGGTGATGAT TGCCGGCCTG ATGTATGGCC TGGAGAAGAA AGAAGCGCAC TGGGAACTGC TGAAAAGCAC CGATTACGCC GGCATCGTCA CCCTGGGCCT GGGGTTAGGC TGCCTGCAGG TGTTTCTGGA AGAAGGCCAC CGCAAGGACT GGCTGGAGTC GAACCTCATC GTCGGCCTGG GGAGTGTGGC CCTGGTCAGC CTGATCACCT TCGTCATCTT GCAGTTTTCC AAACCGCACC CGCTGATCAA CCTGCGCATC CTGGGTAACC GCAACTTCGG CCTGTCGAGC ATCGCCAGCC TGGGCATGGG TGTGGGCCTG TACGGGTCGA TCTACCTGTT GCCGCTGTAC CTGGCGCAGG TGCAGGGCTA CAACGCCTTG CAGATTGGCG AGGTGATCAT GTGGATGGGT ATTCCGCAGC TGTTCCTGAT CCCCTTGGTG CCGCAACTGA TGAAGGTGGT GTCACCCAAG GTGTTGTGCG CGTTGGGGTT CTGCCTGTTC GGGGCTGCCA GTTTCGGCTC TGGGGTGCTC AACCCGGACT TTGCCGGGCC GCAGTTCAAC CACATCCAGA TCATCCGCGC CCTGGGTCAA CCGATGATCA TGGTGACCAT TTCGCTGATC GCCACAGCGT ATATCCAGCC GCAGGATGCA GGGTCGGCGT CGAGCTTGTT CAATATCCTG CGTAACCTGG GCGGGGCCAT CGGCATTGCC CTGCTGGCCA CCCTGCTGGA TGCGCGGACC AAGGTGTATT TCGACTACCT TCGCGAATCG GTGGTGCCGA GCAACCCCCA GGTAGCGGAA AGGCTGGCGC AACTGGCGGA GCGCTTGGGC AATGACAACG CGGCGCTGGG CAAGCTGAGC GAGATTACCC ACCAGCAGGC CATGATCATG GCTTACAACG ATGCGTTCCA TTTTGTCGGG ATAGGCTTGG CGGTAAGCAT GGTGGCGGTG TTGCTGACCC GGAAGTTGCC GGAAGGGTTG AAAGCCGGGG AAGCACATTA A
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Protein sequence | MAGDTLLRPT AEPTRRDWIA VMSVMLGAFM AVLDIQITNS SLKDIQGALS ATLEEGSWIS TSYLVAEIIM IPLTAWLVQL LSARRLAVWV SGGFLLSSLL CSMAWNLESM ILFRALQGFT GGALIPLAFT LTLIKLPEHH RAKGMAMFAM TATFAPSIGP TLGGWLTENW GWEYIFYINI PPGLVMIAGL MYGLEKKEAH WELLKSTDYA GIVTLGLGLG CLQVFLEEGH RKDWLESNLI VGLGSVALVS LITFVILQFS KPHPLINLRI LGNRNFGLSS IASLGMGVGL YGSIYLLPLY LAQVQGYNAL QIGEVIMWMG IPQLFLIPLV PQLMKVVSPK VLCALGFCLF GAASFGSGVL NPDFAGPQFN HIQIIRALGQ PMIMVTISLI ATAYIQPQDA GSASSLFNIL RNLGGAIGIA LLATLLDART KVYFDYLRES VVPSNPQVAE RLAQLAERLG NDNAALGKLS EITHQQAMIM AYNDAFHFVG IGLAVSMVAV LLTRKLPEGL KAGEAH
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