| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_1484 |
|---|
| Symbol | |
|---|
| ID | 5869253 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida GB-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010322 |
|---|
| Strand | + |
|---|
| Start bp | 1669378 |
|---|
| End bp | 1670367 |
|---|
| Gene Length | 990 bp |
|---|
| Protein Length | 329 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 641546591 |
|---|
| Product | signal peptide peptidase SppA, 36K type |
|---|
| Protein accession | YP_001667725 |
|---|
| Protein GI | 167032494 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG0616] Periplasmic serine proteases (ClpP class) |
|---|
| TIGRFAM ID | [TIGR00706] signal peptide peptidase SppA, 36K type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 0.536796 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 47 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCAGACG AATGGAAGGC CCCCGAGGCC GAGCCCGAGG AGCGCGAAGA GCGCAAAAGC
TGGAAGCTGC TGGAAAAGAC CTTGCTGGCC AGCGTGCAGG AGCAGCGCCG CTCGCGGCGC
TGGGGGATCT TCTTCAAGCT GCTGACCTTC GTCTATCTGT TCGGCATCCT GGTGTTGTTC
ACCCCGCTGA TGGACATGGA CAAGGCCGCC TCGCGCAGCG CCAGCCATAC CGCGCTGGTC
GAGGTGCGTG GGGTGATTGC CGATCAGGAG GCTGCCAGCG CCGACAACAT CGTCAAGAGC
CTGCGCGATG CGTTCAAGGA CAGCAAGACC AAGGCTGTGG TGATGCGTAT CAATAGCCCG
GGTGGCAGCC CGGTGCAGGC AGGCTACGTG TATGACGAAA TCCGTCGTCT GCGTGCCGAA
TACCCGGCCA TCAAGTTGTA TGCGGTGATT TCGGATCTTG GTGCTTCCGG GGCCTATTAC
ATTGCCAGTG CGGCGGACGA GATCTACGCC GACAAGGCCA GCCTGGTGGG CTCGATCGGT
GTGACGGCGG CCGGTTATGG GTTTGTCGGC ACCATGGAGA AGCTGGGGGT GGAGCGGCGC
GCCTACACGT CAGGCGAGCA CAAGGCCTTC CTTGACCCGT TCTCGCCGGA AAAGCCCGAA
GAGACCCGAT TCTGGCAGGG CGTGCTGGAC ACCACGCACA ACCAGTTCAT TGCCATGGTC
AAGCAGGGGC GCGGCGAGCG GCTGAAGGAC AAGGAGCACC CGGAGCTGTT CAGTGGTCTG
GTGTGGTCGG GTGAGCAGGC CAAGGCGCTA GGGCTGGTGG ATGGGCTGGG CAGTGCCAGC
TATGTAGCGC GCGAGATCGT TGGTGAGAAG GAGTTGGTCG ACTTCACCGT GCAGGAATCG
CCGTTCGATC GCTTCTCCAA GCGCGTGGGG GCCAGCGTGG CTGAGCACCT GGCGATGTGG
ATGGGCTTTC AAGGGCCGCA GTTGCGCTGA
|
|---|
| Protein sequence | MADEWKAPEA EPEEREERKS WKLLEKTLLA SVQEQRRSRR WGIFFKLLTF VYLFGILVLF
TPLMDMDKAA SRSASHTALV EVRGVIADQE AASADNIVKS LRDAFKDSKT KAVVMRINSP
GGSPVQAGYV YDEIRRLRAE YPAIKLYAVI SDLGASGAYY IASAADEIYA DKASLVGSIG
VTAAGYGFVG TMEKLGVERR AYTSGEHKAF LDPFSPEKPE ETRFWQGVLD TTHNQFIAMV
KQGRGERLKD KEHPELFSGL VWSGEQAKAL GLVDGLGSAS YVAREIVGEK ELVDFTVQES
PFDRFSKRVG ASVAEHLAMW MGFQGPQLR
|
|---|
| |