Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PputGB1_1373 |
Symbol | |
ID | 5869137 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida GB-1 |
Kingdom | Bacteria |
Replicon accession | NC_010322 |
Strand | + |
Start bp | 1535034 |
End bp | 1536068 |
Gene Length | 1035 bp |
Protein Length | 344 aa |
Translation table | 11 |
GC content | 55% |
IMG OID | 641546476 |
Product | polysaccharide biosynthesis protein CapD |
Protein accession | YP_001667616 |
Protein GI | 167032385 |
COG category | [G] Carbohydrate transport and metabolism [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG1086] Predicted nucleoside-diphosphate sugar epimerases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 27 |
Plasmid unclonability p-value | 0.45387 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 21 |
Fosmid unclonability p-value | 0.00458395 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGTTTAAAG GCAAGAAATT ACTCATCACC GGCGGAACCG GATCGTTTGG CAATGCTGTT CTGAAGCGTT TCCTGGACAC TGATATTGCG GAAATCCGCA TTTTCAGCCG AGACGAAAAA AAACAGGATG ACATGCGCAA GCGCTATGCC AGCTCCAAGC TGAAGTTTTA TATCGGCGAT GTGCGTGACT ACCAAAGCGT TTTGAATGCG ACACGGGGTG TCGACTACAT TTTTCATGCG GCCGCGCTGA AGCAGGTGCC ATCCTGCGAG TTTCACCCCA TGGAGGCGGT CAAGACCAAC GTGATTGGTA CCGAAAACCT CTTGGAGGCC GCCATCCAGA ACGAAGTACG TCGGGTTGTT TGCCTGAGCA CTGACAAGGC GGTTTACCCG ATCAACGCCA TGGGTATTTC CAAGGCGATG ATGGAAAAGG TGATGGTTGC GAAATCACGT AACGTCGATG AGAAAAAGAC AGTGATTTGC GGTACTCGCT ATGGCAACGT CATGGCTTCT CGTGGTTCGG TCATCCCCCT GTTCATCGAA CAGATTCGTG CCGGCCAGGC ACTGACCTTG ACGGACCCTA ACATGACGCG CTTCATGATG ACCTTGTCCG ATGCGGTCGA TCTCGTGCTG TATGCCTTCG AGCACGGTAA CAACGGCGAC CTGTTCGTAC AGAAAGCGCC TGCCGCCACC ATTGAAGTGC TGGCCAAGGC GTTGACCGAA CTGGTTGGCA AACCGGCGCA TCCGATCAAT GTCATCGGTA CCCGTCACGG CGAGAAGCTC TACGAAGCGC TGCTGAGCCG AGAGGAACTG GTATGTGCCG AGGACATGGG GGATTACTAC CGCGTGCCGC CAGATCTGCG TGACCTGAAC TACGCGAAAT TCGTGGAAGA GGGCGAGACC CGCCTCTCCA TTACCGAGGA CTACAACTCG CACAACACCC AACGCCTCGA TGTCGCCGGG ATGCAGCAAC TGCTGCGCAA GCTCGACTTC ATTCGTGCCA TCGAACGCGG CGAGCATGCG ACCCCGGAGG AATGA
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Protein sequence | MFKGKKLLIT GGTGSFGNAV LKRFLDTDIA EIRIFSRDEK KQDDMRKRYA SSKLKFYIGD VRDYQSVLNA TRGVDYIFHA AALKQVPSCE FHPMEAVKTN VIGTENLLEA AIQNEVRRVV CLSTDKAVYP INAMGISKAM MEKVMVAKSR NVDEKKTVIC GTRYGNVMAS RGSVIPLFIE QIRAGQALTL TDPNMTRFMM TLSDAVDLVL YAFEHGNNGD LFVQKAPAAT IEVLAKALTE LVGKPAHPIN VIGTRHGEKL YEALLSREEL VCAEDMGDYY RVPPDLRDLN YAKFVEEGET RLSITEDYNS HNTQRLDVAG MQQLLRKLDF IRAIERGEHA TPEE
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