Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PputGB1_1355 |
Symbol | |
ID | 5869119 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida GB-1 |
Kingdom | Bacteria |
Replicon accession | NC_010322 |
Strand | - |
Start bp | 1512923 |
End bp | 1513594 |
Gene Length | 672 bp |
Protein Length | 223 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 641546458 |
Product | phosphoglycolate phosphatase |
Protein accession | YP_001667598 |
Protein GI | 167032367 |
COG category | [R] General function prediction only |
COG ID | [COG0546] Predicted phosphatases |
TIGRFAM ID | [TIGR01449] 2-phosphoglycolate phosphatase, prokaryotic [TIGR01509] haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED [TIGR01549] haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E |
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Plasmid Coverage information |
Num covering plasmid clones | 33 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 37 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCGTTTGC GAGCAGTACT CTTCGACATG GACGGCACCT TGCTCGACAC GGCGCCGGAC TTCATCGCCA TTTGCCAGGC CATGCTCGCC GAGCGCGGCC TGCCGGCCGT TGACGACAAC CTGATCCGCG GCGTGATCTC TGGCGGCGCG CGCGCCATGG TTGCCGCCAC GTTTGCCATG GACCCGGAAA CCGAAGGCTT CGAGGCCCTG CGCCTGGAGT TCCTCGAGCG CTACCAACGC GACTGCGCGG TACACAGCAA ACTGTTCGAT GGCATGGCCG AGCTGCTGGC CGACATCGAA AAAGGCAACC TGCTGTGGGG CGTGGTCACC AACAAGCCGG TACGCTTCGC CGAGCCGATC ATGCAGCAAC TGGGCCTGGC CGAACGCTCG GCACTGCTGA TCTGCCCGGA CCACGTGAAA AACAGCAAAC CCGACCCCGA ACCGCTGATC CTGGCCTGCA AAACCTTGAA CCTGGACCCG GCCAGCGTGC TGTTCGTCGG CGACGACCTG CGCGACATCG AGTCTGGCCG CGACGCTGGC ACCCGCACGG CGGCGGTGCG CTACGGCTAT ATTCATCCAG AGGACAACCC GAACAACTGG GGCGCCGACG TGGTGGTGGA CCACCCGCTG GAGCTGCGCA AAGTGATCGA CAGCGCGCTG TGCGGCTGCT GA
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Protein sequence | MRLRAVLFDM DGTLLDTAPD FIAICQAMLA ERGLPAVDDN LIRGVISGGA RAMVAATFAM DPETEGFEAL RLEFLERYQR DCAVHSKLFD GMAELLADIE KGNLLWGVVT NKPVRFAEPI MQQLGLAERS ALLICPDHVK NSKPDPEPLI LACKTLNLDP ASVLFVGDDL RDIESGRDAG TRTAAVRYGY IHPEDNPNNW GADVVVDHPL ELRKVIDSAL CGC
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