Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PputGB1_1343 |
Symbol | mnmC |
ID | 5869107 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida GB-1 |
Kingdom | Bacteria |
Replicon accession | NC_010322 |
Strand | - |
Start bp | 1497962 |
End bp | 1499926 |
Gene Length | 1965 bp |
Protein Length | 654 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 641546446 |
Product | 5-methylaminomethyl-2-thiouridine methyltransferase |
Protein accession | YP_001667586 |
Protein GI | 167032355 |
COG category | [E] Amino acid transport and metabolism [S] Function unknown |
COG ID | [COG0665] Glycine/D-amino acid oxidases (deaminating) [COG4121] Uncharacterized conserved protein |
TIGRFAM ID | [TIGR03197] tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain |
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Plasmid Coverage information |
Num covering plasmid clones | 24 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 36 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCCACCC TCCTCCAGCA CGCCCAGATC GACTGGGACG ACCAGGGCCG CCCCCACTCG CGGCAATACG ACGACGTCTA TTTCGCGGTC AACGAAGGCA TTGAAGAAAC CAAGCACGTG TTCCTCGGCC AGACCCGCCT GGCCGAGCGC TTTGCCAACC TGGCGCCGCA TACCTGCGGG GTGATCGGCG AAACCGGTTT TGGCACCGGG ATGAATTTTT TCTGCGCCTG GCAGCTGTTC GACCAGCACG CTCACCGCGA CGCGCGCCTG CACTTCGTCA GCGTCGAAAA GTACCCCCTT GGCCACGCTG ACATGGCCCG CGCCGTAAGC CTGTGGCCTG AGCTAGCTGC CTATACCGAG CCGCTGCTGG AGCAATACGT GGCGGTACAC CCAGGTTTTC AGCAGTTCAC CTTCGCCAAT GGCCGGGTCA CCCTCACGCT GTTGATCGGC GATGTGCTGG AACAGCTGCC GCAACTCGAT GCACAGATCG ATGTGTGGTT CCTCGATGGC TTCGCCCCTG CCAAGAACCC CGACATGTGG ACCCCAGAGC TGTTCGCGCA GCTGGCGCGG CTATCGCACC CGGGCACAGT GCTGGGCACG TTCACCACCA CCGGCTGGGT ACGCCGCAGC CTGGTCGAAG CTGGCTTCGC CATGAAGAAG GTGCCAGGCA TCGGCAAGAA GTGGGAGGTG ATGAGCGGCG CCTACGTCGG CCCCGTCCCC GGCCCCAAAG CCCCCTGGTA CGCACGCCCA GCGGTTGCAC AAGGGCCGCG CGAAGCGCTG GTGATCGGTG CCGGGCTCGC CGGCAGCACA ACCGCTGCCA GCCTGGCCCG GCGTGGCTGG CAGGTCACTG TGCTGGAGCG CCACGAAGCC CCGGCCCAGG AAGCTTCGGG CAACCCGCAA GGGGTGTTGT ACCTCAAGCT GTCTGCCCAT GGCACCGCGC TGTCGCAGAT GATTCTGTCC GGGTTCGGCT ACACGCGGCG CCAGCTCCAG CGCTTGCAAC GTGGCCAGGA CTGGGATGCC TGCGGCGTGC TGCAGTTGGC CTTCGACGCC AAGGAGGCCG AACGCCAGGG CAAACTGGCC GCCGCCTTCG ACCACGACTT GCTGCACGCG CTGGAGCGCG CCGAGGCCGA AGCCATCGCC GGGGTGGCCT TGCCAGCCGG TGGGTTGTTC TACCCCGAAG GGGGTTGGGT GCACCCGCCG GCGCTGTGCC AGCAGCAGTT GCAGCACCCA GGTATTCGCC TGCTGACCCA CCAGGACGTC ATCGAGCTGC GCAACATTGG TCAACACTGG CAAGCCTGGG CTGGCGATCG CCTGCTGGCC AGCGCACCGG TGGTGGTCCT GGCCGGCGCT GCCGATGTGC GCCGTTTCGA GCCTTGCGCG CAGTTGCCGC TCAAGCGCAT CCGTGGGCAG ATCACCCGCT TGCCGGCCAC CGCCAGCAGC CGGGCGCTGC GTACCGTGGT GTGCGCGGAA GGCTATGTGG CACCACCGCG CGGGGATGAA CATACCCTGG GCGCGAGTTT TGATTTCCAC AGCGAAGACC TTGCGCCGAC GGTGGCCGAA CACCAGGGCA ACCTGGCGCT GCTGGACGAG ATTTCCGTCG ACCTGGCGCA GCGGCTGGGC GTGGCTGAAC TGGACGCTGA ACAGTTGCAG GGGCGTGCAG CGTTCCGTTG CACCAGCCCG GATTACCTGC CAATCGTCGG GCCGCTGGCC GACAGCCAGG CGTTTGCCGA GGCCTATGCG GTGCTGGGCC GGGATGCGCG GCAGGTGCCG GATGTGGCCT GCCCATGGCT GGGCGGGTTG TACGTGAACA GTGGGCATGG CTCGCGCGGG TTGATCACAG CGCCGTTGAG TGGCGAGCTG GTGGCGGCCT GGGTGTGCGG GGAACCGTTG CCGTTGCCCC GCGCGGTGGC AGAAGCTTGT CATCCGAACC GGTTCGCCTT GCGTAGGTTG ATTCGGGGCA AGTGA
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Protein sequence | MSTLLQHAQI DWDDQGRPHS RQYDDVYFAV NEGIEETKHV FLGQTRLAER FANLAPHTCG VIGETGFGTG MNFFCAWQLF DQHAHRDARL HFVSVEKYPL GHADMARAVS LWPELAAYTE PLLEQYVAVH PGFQQFTFAN GRVTLTLLIG DVLEQLPQLD AQIDVWFLDG FAPAKNPDMW TPELFAQLAR LSHPGTVLGT FTTTGWVRRS LVEAGFAMKK VPGIGKKWEV MSGAYVGPVP GPKAPWYARP AVAQGPREAL VIGAGLAGST TAASLARRGW QVTVLERHEA PAQEASGNPQ GVLYLKLSAH GTALSQMILS GFGYTRRQLQ RLQRGQDWDA CGVLQLAFDA KEAERQGKLA AAFDHDLLHA LERAEAEAIA GVALPAGGLF YPEGGWVHPP ALCQQQLQHP GIRLLTHQDV IELRNIGQHW QAWAGDRLLA SAPVVVLAGA ADVRRFEPCA QLPLKRIRGQ ITRLPATASS RALRTVVCAE GYVAPPRGDE HTLGASFDFH SEDLAPTVAE HQGNLALLDE ISVDLAQRLG VAELDAEQLQ GRAAFRCTSP DYLPIVGPLA DSQAFAEAYA VLGRDARQVP DVACPWLGGL YVNSGHGSRG LITAPLSGEL VAAWVCGEPL PLPRAVAEAC HPNRFALRRL IRGK
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